[Bioperl-l] tests failing badly

[Hilmar Lapp]

On Monday, September 9, 2002, at 09:19  PM, Aaron J Mackey wrote:

>  I apologize greatly for not making sure
> everything else tested out OK (but, in fact, all tests ran cleanly 
> here).

No problem. The test OK/not OK is a weird thing though ... why do 
you get warnings when here all runs OK, and vice versa? I'm running 
perl 5.6.0 on Mac OSX 10.1.5 ...

> But whatever you've changed seems to have introduced a myriad of 
> warnings,
> and now EncodedSeq seems to think it's a protein sometimes ...
>

Yeah I think I found that place in EncodedSeq. There was one call to 
set/change the sequence. I just added passing the alphabet in 
addition (so if it's defined, changing the sequence prevents 
changing the alphabet). That fixed the problem.

>
> mea culpa, mea culpa,
>

Again, no problem. Everyone leaves problems behind once in a while, 
tests don't reveal everything ... (in fact it was me who left e.g. 
the bad Bio:Root typo couple days ago ... the bioperl tests 
strangely enough didn't reveal the problem until all the bioperl-db 
tests collapsed)

	-hilmar
--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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