[Bioperl-l] tests failing badly

[Hilmar Lapp]

I fixed PrimarySeq, some errors are still there:

Failed Test         Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/EncodedSeq.t       255 65280    31    0   0.00%
t/LocationFactory.t              131    8   6.11%  13-15 21 23-25 31
t/RepeatMasker.t       2   512     6    0   0.00%  ??
Failed 3/105 test scripts, 97.14% okay. 7/4020 subtests failed, 
99.83% okay.

EncodedSeq.t:

t/EncodedSeq..............ok 32/31
------------- EXCEPTION  -------------
MSG: Sequence is a protein. Cannot revcom
STACK Bio::PrimarySeqI::revcom blib/lib/Bio/PrimarySeqI.pm:362
STACK Bio::Seq::EncodedSeq::cds Bio/Seq/EncodedSeq.pm:476
STACK toplevel t/EncodedSeq.t:74

--------------------------------------
t/EncodedSeq..............dubious
         Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED test
         Failed 0/31 tests, 100.00% okay

RepeatMasker test is still failing due to a missing file (according 
to Shawn).

I'm going to investigate LocationFactory.t next. did anyone change 
something there??

	-hilmar

On Monday, September 9, 2002, at 05:32  PM, Hilmar Lapp wrote:

> I just did a cvs update ...
>
> Failed Test         Stat Wstat Total Fail  Failed  List of Failed
> -------------------------------------------------------------------------------
> t/AlignStats.t       255 65280    15   11  73.33%  2-3 7-15
> t/EncodedSeq.t                    31   ??       %  ??
> t/LocationFactory.t              131    8   6.11%  13-15 21 23-25 31
> t/RepeatMasker.t       2   512     6    0   0.00%  ??
> t/SeqAnal.t          255 65280     1    1 100.00%  1
> t/Tools.t            255 65280     8    4  50.00%  5-8
> Failed 6/105 test scripts, 94.29% okay. 18/4020 subtests failed, 
> 99.55% okay.
>
> Many of which have to do with alphabet setting ... I'm going to 
> investigate as I need to have this working.
>
> 	-hilmar
> --
> -------------------------------------------------------------
> Hilmar Lapp                            email: lapp at gnf.org
> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
> -------------------------------------------------------------
>
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--
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------