[Bioperl-l] Please test

[Shailesh L Mistry]

Hi Ewan,


just done an update and I get the following errors :-

Failed Test  Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t\SearchIO.t                     658    4   0.61%  19 317 342 347
t\consed.t                           15    2  13.33%  12 14


1) t\SearchIO.t    (got:1.46134e-90 but expected:1.46134e-090)

I think we are agreed to let this one go since it is only a question of format.


2) t\consed.t
a) I just checked in WinCVS and consed.pm is at revision 1.19 and is labelled
"biopel-devel-1-1-1" but it still contains and line 105 still says "use
Dumpvalue qw(dumpValue);" instead of "use Dumpvalue;". Can you confirm this?

b) Test 12 got:114 but expected 179
This test enters count_sequences_with_grep and checks in acefile.ace.1 to find
114 AF's. It then checks the path (bioperl-live/) for files using :-

next unless ($f =~ /\.singlets$/);

nothing matches so the final return value is 114.
Please can you confirm the path it should be looking in and which files it
should find.


c) Test 14 got:179 but expected:114
The value from test 12 is used here so another error is flagged.

Good luck with the release this weekend.

Shelly.