[Bioperl-l] 1.1.1 progress

[Ewan Birney]

Well... I knew it wasn't going to be easy.


I am currently bug fixing against 5.0005

Summary of my perl5 (5.0 patchlevel 5 subversion 3) configuration:


I have delt with two big ones 

  (a) using "our" in the primaryseq module (changed to "my" - is this ok 
hilmar?)


  (b) building a work around for flush for 5.005 etc. Now Bio::Root::IO
has a method "flush" which should "do the right thing".





I am working on:



Failed Test  Status Wstat Total Fail  Failed  List of failed
-------------------------------------------------------------------------------
t/BPlite.t      255 65280    97   96  98.97%  2-97
t/CoordinateMap   2   512   147  147 100.00%  1-147
t/EncodedSeq.t  255 65280    37   37 100.00%  1-37
t/Index.t         0    11    12   12 100.00%  1-12
t/RandomTreeFac 255 65280     4    2  50.00%  3-4
t/TreeIO.t      255 65280    17   13  76.47%  5-17
t/UniGene.t                  42   14  33.33%  3-8, 11, 16-21, 23
t/flat.t        255 65280     7    3  42.86%  5-7



Some of which will be trivial, some hard. Given Hilmar's recent posts I 
would also like to ensure that aliases for the old method calls on 
SeqFeatureI are there (Hilmar - if you don't get around to this, I will 
get around to it ;)).




We are getting closer to 1.1.1.... a little way yet....





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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
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