[Bioperl-l] BPlite and frames

Andy Nunberg anunberg@oriongenomics.com
Fri, 10 May 2002 09:56:09 -0500


Hi,
I am a new user to bioperl. I am using BPlite to parse blast reports
(blastn,blastx..) and would 
like to capture frame information for each HSP.  As I iterate over each HSP
I use the frame subroutine
but I get a 0-2 number instead of +1 or -3.  Is their a fix to the
subroutine to return the correct values?
Andy
*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com