[Bioperl-l] Bio::Cluster
Allen Day
allenday@ucla.edu
Fri, 3 May 2002 18:14:47 -0700 (PDT)
Is there a plan to make general Bio::Cluster and Bio::ClusterIO classes?
I see that UnigeneIO is using Bio::SeqIO to do it's reading/writing, and
isn't inheriting from the (non-existant) Bio::Cluster class.
I was thinking about writing classes for the dbSNP XML files today. Would
it be more appropriate to put them under Bio::DB or Bio::Cluster ? Either
way I'll need to do some clustering to represent the refSNP/subSNP
relationship.
I guess this also has implications for future microarray classes.
Any good ideas?
-Allen