[Bioperl-l] Performance improvements for gbrowse

Lincoln Stein lstein@formaggio.cshl.org
Tue, 25 Jun 2002 21:53:13 -0400


Hi All,

I made a few fixes to Bio::Graphics that will make the performance of
gbrowse better when dealing with large overlapping sets of features
like ESTs.  Update to the latest CVS version of bioperl-live or the
"release" branch branch-1-0-0 and reinstall.  When laying out a test
set of 500 ESTs, I get a relative speed increase of about 5X.

Lincoln

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
Positions available at my lab: see http://stein.cshl.org/#hire
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