[Bioperl-l] indexing and accessing local database

[Jason Stajich]

What operating system are you using and version of Perl?

On Tue, 9 Jul 2002, Qunfeng Dong wrote:

> Hi,
>
> I am trying to follow the sample code from
> http://bioperl.org/Core/POD/bptutorial.html#III_1_1_Accessing_remote_databas
>
> to build a local fasta sequence database
>  #!/usr/bin/perl -w
>  #scriptName - BuildIndex.pl
>   use Bio::Index::Fasta; # using fasta file format
>   $Index_File_Name = shift;
>   $inx = Bio::Index::Fasta->new(
>       -filename => $Index_File_Name,
>       -write_flag => 1);
>   $inx->make_index(@ARGV);
>
>
> then I ran the script BuildIndex.pl as
> % BuildIndex.pl indexName FastaSeqName
> and I got Segmentation fault. Any idea why?
>
> Qunfeng Dong
>
>
>
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu