[Bioperl-l] Re: Inline::C and io_lib

[Aaron J Mackey]

OK, well I spent my day on an Inline::C wrapper around the io_lib - and,
mostly, integrating that into bioperl.  I'm almost there - reading is
done, writing is 95% done.  This includes the following IO formats:

scf
abi
alf
pln
exp
ctf
ztr

My current code has a Bio::SeqIO::staden::read that gets invoked via
Bio::SeqIO::abi, Bio::SeqIO::ztr, etc.  staden::read is the only Inline::C
using module; this way, the others can be replaced by pure-perl as
necessary/desired.

Anyone have some test files they can send me to play with?

I expect to have this wrapped up quickly, so I can move on to other
things.

-Aaron

On Mon, 8 Jul 2002, Chad Matsalla wrote:

>
> On Mon, 8 Jul 2002, Lincoln Stein wrote:
>
> > I have a .XS file that interfaces to many of the Staden io_lib routines (we
> > use it for getting the chromatogram data out of SCF files).  Should I post it
> > to the list?
>
> Yes, please. That would be useful.
>
> I am interested in working with (reading and writing) ZTR files. Are
> many people commonly working with ZTR at this time?
>
> Chad Matsalla
>
>
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-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey@virginia.edu