[Bioperl-l] RE: exonerate and crossmatch: Where are you?!

[Brian Desany]

> I would suggest switching to exonerate or crossmatch as your alignment
> engine -- it will also go faster!"

> My question:  Has anyone used the above mentioned alignment
> engines before?  I've searched around, but had no luck.  Can
> someone point this lost bioperl soul in the right direction? :)
>

For crossmatch, go to http://www.phrap.org/. I believe crossmatch is
distributed with phrap.