[Bioperl-l] Motif finding

[Jason Stajich]

I would consider using EMBOSS's fuzzynuc.

We do have a module that does a similar thing called
Bio::Tools::SeqPattern.

-jason
On Wed, 20 Feb 2002, Desmond Lim wrote:

> Is there a way of finding motifs in a strand of DNA?
> The thing is, I want to find exact matches and some fuzzy ones (i.e 80% exact). Is
> there a perl module to do it?
>
> Thanks.
>
> Desmond
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu