[Bioperl-l] Correct SearchIO usage

Brian Carlson bcarlson@genetics.emory.edu
Thu, 19 Dec 2002 14:01:52 -0500


I'm looking to use Bioperl::SearchIO to read a blast alignment file.   Then search all the alignments for a dna sequence in one species, and return the matching base pairs from the second species.  Is SearchIO the module to use to do this?  If so, which method(s) would I use to find the sequence and return the matching sequence.

Thanks,
Brian