[Bioperl-l] *major* error in genbank parser or am i just insane?

[Hilmar Lapp]

> -----Original Message-----
> From: Jason Stajich [mailto:jason@cgt.mc.duke.edu]
> Sent: Friday, August 09, 2002 10:55 AM
> To: Hilmar Lapp
> Cc: Ewan Birney; Chris Mungall; Elia Stupka; bioperl-l@bioperl.org
> Subject: RE: [Bioperl-l] *major* error in genbank parser or am i just
> insane?
> 
[...]
> 
> I'd suggest that 1st we derive a set of test cases which break the
> expected semantics, put these in a new test file or as part 
> of t/SeqIO.t
> show that the parser currently does the wrong thing and then set about
> trying to fix it.

Right. Just to mention it, t/SeqLocation.t tests the data model itself and hence some tests may go there too, specifically things like

> complement(join(1..200,205..300),complement(500..600))
> join(complement(1..200),205..300,complement(500..600))
> 


	-hilmar