[Bioperl-l] Problems parsing blast report with BPlite

Gert Thijs gert.thijs@esat.kuleuven.ac.be
Thu, 04 Apr 2002 13:16:53 +0200


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Hello,

While using my scripts to pars blast reports, I stumbled upon a problem, which 
I do not know if it is bioperl related or comes from a slight change of format 
at NCBI.

I used the following code to step through a blast output file generated by the 
  ncbi program 'blastcl3' in which multiple reports are stored (an example is 
found in attachment).
--
while(<FILE>) {
  if ( /^Query=(.*)$/ ){
   seek FILE, -length($_), 1;
   my $report = Bio::Tools::BPlite->new(\*FILE);
	
   while ( my $sbjct = $report->nextSbjct){
    # do some stuff
   }
  }
}
--

This code worked fine untill recently, when I installed bioperl-1.0 (but, I am 
not sure it is a bioperl-1.0 problem, since at the same time there were also 
problems with the blastcl3 program, which were caused by some server problems 
at NCBI).
The problem is that the program cannot extract the next blast report from the 
file. The processing of the first report was OK, but once the second query 
sequence is found the program stopped.
I looked into the code of BPlite to see what was happening and I found the 
following problem. The parser searches for a line starting with 'Database' 
after the line starting with 'Query='. Now in the file I have include in this 
mail there is no line starting with 'Database' following the second query on 
line 530, this means that the parser reads all the lines in the remainder of 
the file and then stops without creating the BPlite object correctly.

I found a way to fix this problem, but I am not sure if it is a good one.
I just added an extra element to check for in the if-statement on line 374 in 
Bio::Tools::BPlite.pm. In the blast report there is a line following the 
'Query=' line which starts with 'Sequences'.

--
Bio::Tools::BPlite.pm line 374
while( defined($_ = $self->_readline() ) ) {	
  # if( $_ =~ /^Database/ ) { $self->_pushback($_); last; }
  if( $_ =~ /^Database|^Sequences/ ) { $self->_pushback($_); last; }
  $query .= $_;
}
--

With this fix my scripts are working properly again.


many thanks,
Gert


-- 
+ Gert Thijs
+
+ email: gert.thijs@esat.kuleuven.ac.be
+ homepage: http://www.esat.kuleuven.ac.be/~thijs
+
+ K.U.Leuven
+ ESAT-SISTA
+ Kasteelpark Arenberg 10
+ B-3001 Leuven-Heverlee
+ Belgium
+ Tel : +32 16 32 85 88 (new number)
+ Fax : +32 16 32 19 70

--------------070307020303060002070505
Content-Type: text/plain;
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BLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MUSMRP14A M83219|AnnotatedGene|gene|34|375|1|+|.|id MRP14  ;
number 1  
         (342 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
           1,192,858 sequences; 867,074,787 total letters

Searching... please wait.. done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NM_009114.1| Mus musculus S100 calcium binding protein A9 (c...   678  0.0
gb|M83219.1|MUSMRP14A Mus musculus intracellular calcium-binding...   678  0.0
emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 pro...   379  e-102
ref|NM_053587.1| Rattus norvegicus S100 calcium-binding protein ...   301  2e-79
gb|L18948.1|RATMRP14 Rattus norvegicus intracellular calcium-bin...   301  2e-79
gb|AF091849.1|AF091849 Oryctolagus cuniculus calgranulin B mRNA,...    92  4e-16
dbj|D17404.1|RABMRP14 Rabbit mRNA for macrophage migration inhib...    90  2e-15
ref|NM_002965.2| Homo sapiens S100 calcium binding protein A9 (c...    68  6e-09
gb|AC011666.28|AC011666 Human Chromosome 1q21 BAC 236c22, comple...    68  6e-09
gb|AF237582.1|AF237582 Homo sapiens migration inhibitory factor-...    68  6e-09

>ref|NM_009114.1| Mus musculus S100 calcium binding protein A9 (calgranulin B)
           (S100a9), mRNA
          Length = 488

 Score =  678 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34  atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 93

                                                                       
Query: 61  catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 153

                                                                       
Query: 121 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 213

                                                                       
Query: 181 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 273

                                                                       
Query: 241 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 333

                                                     
Query: 301 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 375


>gb|M83219.1|MUSMRP14A Mus musculus intracellular calcium-binding protein (MRP14) mRNA,
           complete cds
          Length = 488

 Score =  678 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34  atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 93

                                                                       
Query: 61  catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 153

                                                                       
Query: 121 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 213

                                                                       
Query: 181 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 273

                                                                       
Query: 241 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 333

                                                     
Query: 301 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 375


>emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 protein exons 1-3
          Length = 6991

 Score =  379 bits (191), Expect = e-102
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                        
Query: 152  agaaagagaagagaaatgaagccctcataaatgacatcatggaggacctggacacaaacc 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6443 agaaagagaagagaaatgaagccctcataaatgacatcatggaggacctggacacaaacc 6502

                                                                        
Query: 212  aggacaatcagctgagctttgaggagtgtatgatgctgatggcaaagttgatctttgcct 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6503 aggacaatcagctgagctttgaggagtgtatgatgctgatggcaaagttgatctttgcct 6562

                                                                        
Query: 272  gtcatgagaagctgcatgagaacaacccacgtgggcatggccacagtcatggcaaaggct 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6563 gtcatgagaagctgcatgagaacaacccacgtgggcatggccacagtcatggcaaaggct 6622

                       
Query: 332  gtgggaagtaa 342
            |||||||||||
Sbjct: 6623 gtgggaagtaa 6633


 Score =  303 bits (153), Expect = 6e-80
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 4144

                                                                        
Query: 61   catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 4204

                                             
Query: 121  atggtggaagcacagttggcaacctttatgaag 153
            |||||||||||||||||||||||||||||||||
Sbjct: 4205 atggtggaagcacagttggcaacctttatgaag 4237


>ref|NM_053587.1| Rattus norvegicus S100 calcium-binding protein A9 (calgranulin B)
           (S100a9), mRNA
          Length = 494

 Score =  301 bits (152), Expect = 2e-79
 Identities = 281/324 (86%)
 Strand = Plus / Plus

                                                                       
Query: 19  tctcagatggagcgcagcataaccaccatcatcgacaccttccatcaatactctaggaag 78
           |||||| ||||||||||||||| |||||||||| |    |||||||| ||||||||||||
Sbjct: 50  tctcagctggagcgcagcataagcaccatcatcaatgttttccatcagtactctaggaag 109

                                                                       
Query: 79  gaaggacaccctgacaccctgagcaagaaggaattcagacaaatggtggaagcacagttg 138
            | ||||| ||||||||||||| ||||  |||||||| | |||||||| |     | |||
Sbjct: 110 tatggacatcctgacaccctgaacaaggcggaattcaaagaaatggtgaataaggacttg 169

                                                                       
Query: 139 gcaacctttatgaagaaagagaagagaaatgaagccctcataaatgacatcatggaggac 198
            |||  ||| ||||||  ||||| |||||||||   ||| |||  |||||||||||||||
Sbjct: 170 ccaaattttctgaagagggagaaaagaaatgaaaatctcctaagagacatcatggaggac 229

                                                                       
Query: 199 ctggacacaaaccaggacaatcagctgagctttgaggagtgtatgatgctgatggcaaag 258
           ||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||
Sbjct: 230 ctggacacaaaccaggacaatcaactgtcctttgaggagtgtatgatgctgatgggaaag 289

                                                                       
Query: 259 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatggccacagt 318
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 290 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatgaccacagg 349

                                   
Query: 319 catggcaaaggctgtgggaagtaa 342
           || |||||||||||||||||||||
Sbjct: 350 cacggcaaaggctgtgggaagtaa 373


>gb|L18948.1|RATMRP14 Rattus norvegicus intracellular calcium-binding protein (MRP14)
           mRNA, complete cds
          Length = 494

 Score =  301 bits (152), Expect = 2e-79
 Identities = 281/324 (86%)
 Strand = Plus / Plus

                                                                       
Query: 19  tctcagatggagcgcagcataaccaccatcatcgacaccttccatcaatactctaggaag 78
           |||||| ||||||||||||||| |||||||||| |    |||||||| ||||||||||||
Sbjct: 50  tctcagctggagcgcagcataagcaccatcatcaatgttttccatcagtactctaggaag 109

                                                                       
Query: 79  gaaggacaccctgacaccctgagcaagaaggaattcagacaaatggtggaagcacagttg 138
            | ||||| ||||||||||||| ||||  |||||||| | |||||||| |     | |||
Sbjct: 110 tatggacatcctgacaccctgaacaaggcggaattcaaagaaatggtgaataaggacttg 169

                                                                       
Query: 139 gcaacctttatgaagaaagagaagagaaatgaagccctcataaatgacatcatggaggac 198
            |||  ||| ||||||  ||||| |||||||||   ||| |||  |||||||||||||||
Sbjct: 170 ccaaattttctgaagagggagaaaagaaatgaaaatctcctaagagacatcatggaggac 229

                                                                       
Query: 199 ctggacacaaaccaggacaatcagctgagctttgaggagtgtatgatgctgatggcaaag 258
           ||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||
Sbjct: 230 ctggacacaaaccaggacaatcaactgtcctttgaggagtgtatgatgctgatgggaaag 289

                                                                       
Query: 259 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatggccacagt 318
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 290 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatgaccacagg 349

                                   
Query: 319 catggcaaaggctgtgggaagtaa 342
           || |||||||||||||||||||||
Sbjct: 350 cacggcaaaggctgtgggaagtaa 373


>gb|AF091849.1|AF091849 Oryctolagus cuniculus calgranulin B mRNA, partial cds
          Length = 480

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                       
Query: 177 cataaatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgagga 236
           ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 132 cataaatgatatcatggaggacctggacacgaaccaggacaagcagctgagctttgaaga 191

             
Query: 237 gt 238
           ||
Sbjct: 192 gt 193


>dbj|D17404.1|RABMRP14 Rabbit mRNA for macrophage migration inhibitory factor-related
           protein-14 (MRP-14), partial cds
          Length = 114

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 178 ataaatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggag 237
           |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1   ataaatgatatcatggaggacctggacacgaaccaggacaagcagctgagctttgaagag 60

            
Query: 238 t 238
           |
Sbjct: 61  t 61


>ref|NM_002965.2| Homo sapiens S100 calcium binding protein A9 (calgranulin B)
           (S100A9), mRNA
          Length = 576

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
           |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 227 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 286

                     
Query: 245 tgctgatggc 254
           ||||||||||
Sbjct: 287 tgctgatggc 296


>gb|AC011666.28|AC011666 Human Chromosome 1q21 BAC 236c22, complete sequence [Homo sapiens]
          Length = 114364

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 185   acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
             |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 24901 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 24842

                       
Query: 245   tgctgatggc 254
             ||||||||||
Sbjct: 24841 tgctgatggc 24832


>gb|AF237582.1|AF237582 Homo sapiens migration inhibitory factor-related protein 14 variant E
            (S100A9) gene, complete cds
          Length = 4804

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                        
Query: 185  acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
            |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 3827 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3886

                      
Query: 245  tgctgatggc 254
            ||||||||||
Sbjct: 3887 tgctgatggc 3896


>gb|AF237581.1|AF237581 Homo sapiens migration inhibitory factor-related protein 14 variant P
            (S100A9) gene, complete cds
          Length = 4804

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                        
Query: 185  acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
            |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 3827 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3886

                      
Query: 245  tgctgatggc 254
            ||||||||||
Sbjct: 3887 tgctgatggc 3896


>emb|AL591704.7|AL591704 Human DNA sequence from clone RP1-128L15 on chromosome 1q21.1-21.3,
             complete sequence [Homo sapiens]
          Length = 164144

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 185   acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
             |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 56315 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 56374

                       
Query: 245   tgctgatggc 254
             ||||||||||
Sbjct: 56375 tgctgatggc 56384


>gb|AF086362.1|HUMZD66A09 Homo sapiens full length insert cDNA clone ZD66A09
          Length = 567

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
           |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 206 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 265

                     
Query: 245 tgctgatggc 254
           ||||||||||
Sbjct: 266 tgctgatggc 275


>gb|M26311.1|HUMCFA Human cystic fibrosis antigen mRNA, complete cds
          Length = 565

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
           |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 213 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 272

                     
Query: 245 tgctgatggc 254
           ||||||||||
Sbjct: 273 tgctgatggc 282


>emb|X06233.1|HSMRP14 Human mRNA for calcium-binding protein in macrophages (MRP-14)
           macrophage migration inhibitory factor (MIF)-related
           protein
          Length = 462

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
           |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 226 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 285

                     
Query: 245 tgctgatggc 254
           ||||||||||
Sbjct: 286 tgctgatggc 295


>gb|M21064.1|HUMMRP14A Human migration inhibitory factor-related protein 14 (MRP14) gene,
            complete cds
          Length = 4439

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                        
Query: 185  acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
            |||||||||||||||||||||||||    ||||| ||||||||||| |||||||  || |
Sbjct: 3479 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3538

                      
Query: 245  tgctgatggc 254
            ||||||||||
Sbjct: 3539 tgctgatggc 3548


>gb|AC104771.4| Homo sapiens BAC clone RP11-1E1 from 4, complete sequence
          Length = 146586

 Score = 44.1 bits (22), Expect = 0.087
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 95    ccctgagcaagaaggaattcag 116
             ||||||||||||||||||||||
Sbjct: 35220 ccctgagcaagaaggaattcag 35199


>gb|AC068287.5| Homo sapiens BAC clone RP11-532L9 from 2, complete sequence
          Length = 160222

 Score = 44.1 bits (22), Expect = 0.087
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 151   aagaaagagaagagaaatgaag 172
             ||||||||||||||||||||||
Sbjct: 78845 aagaaagagaagagaaatgaag 78824


>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence
          Length = 177954

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   gaaagagaagagaaatgaagc 173
             |||||||||||||||||||||
Sbjct: 40880 gaaagagaagagaaatgaagc 40860


>gb|AC008844.5|AC008844 Homo sapiens chromosome 5 clone CTD-2157L4, complete sequence
          Length = 113759

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   gaaagagaagagaaatgaagc 173
             |||||||||||||||||||||
Sbjct: 49789 gaaagagaagagaaatgaagc 49769


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 29, 2002 12:33 AM
  Number of letters in database: 867,074,787
  Number of sequences in database:  1,192,858
  
Lambda     K      H
    1.37    0.711 5.30e-313 

Gapped
Lambda     K      H
    1.37    0.711 5.30e-313 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,258,003
Number of Sequences: 1192858
Number of extensions: 1258003
Number of successful extensions: 28015
Number of sequences better than 10.0: 123
length of query: 342
length of database: 5,162,042,083
effective HSP length: 20
effective length of query: 322
effective length of database: 5,138,184,923
effective search space: 1654495545206
effective search space used: 1654495545206
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

Query= AF061272 AF061272|AnnotatedGene|gene|161|820|1|+|.|id Mcl  ;
number 1  
         (660 letters)

Searching... please wait.. done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NM_010819.1| Mus musculus C-type (calcium dependent, carbohy...  1308  0.0
gb|AF061272.1|AF061272 Mus musculus C-type lectin (Mcl) mRNA, co...  1308  0.0
ref|XM_062656.2| Homo sapiens C-type lectin-like receptor (CLEC-...   153  3e-34
ref|NM_080387.1| Homo sapiens C-type lectin-like receptor (CLEC-...   153  3e-34
gb|AF411850.1|AF411850 Homo sapiens C-type lectin-like receptor ...   153  3e-34
gb|AC079632.4| Oryza sativa chromosome 10 clone OSJNBa0046L02, c...    40  2.7
gb|AC108883.1| Genomic sequence for Oryza sativa, Nipponbare str...    40  2.7
gb|AC073958.4|AC073958 Homo sapiens BAC clone RP11-533L22 from 7...    40  2.7
gb|AC010913.9|AC010913 Homo sapiens BAC clone RP11-44N22 from 2,...    40  2.7
gb|AC090952.2|AC090952 Homo sapiens chromosome 3 clone RP11-588H...    40  2.7

>ref|NM_010819.1| Mus musculus C-type (calcium dependent, carbohydrate recognition
           domain) lectin, superfamily member 9 (Clecsf8), mRNA
          Length = 918

 Score = 1308 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 220

                                                                       
Query: 61  tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 280

                                                                       
Query: 121 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 340

                                                                       
Query: 181 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 400

                                                                       
Query: 241 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 460

                                                                       
Query: 301 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 520

                                                                       
Query: 361 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 580

                                                                       
Query: 421 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 640

                                                                       
Query: 481 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 700

                                                                       
Query: 541 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 760

                                                                       
Query: 601 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 820


>gb|AF061272.1|AF061272 Mus musculus C-type lectin (Mcl) mRNA, complete cds
          Length = 918

 Score = 1308 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 220

                                                                       
Query: 61  tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 280

                                                                       
Query: 121 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 340

                                                                       
Query: 181 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 400

                                                                       
Query: 241 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 460

                                                                       
Query: 301 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 520

                                                                       
Query: 361 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 580

                                                                       
Query: 421 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 640

                                                                       
Query: 481 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 700

                                                                       
Query: 541 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 760

                                                                       
Query: 601 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 820


>ref|XM_062656.2| Homo sapiens C-type lectin-like receptor (CLEC-6), mRNA
          Length = 947

 Score =  153 bits (77), Expect = 3e-34
 Identities = 305/381 (80%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
           |||||||||||||||||| ||||| || |||||||||| ||||||| |||| |||  |||
Sbjct: 452 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 511

                                                                       
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
           ||| || |||||||| ||||||||| |    |||||| ||||||||| ||| ||||| ||
Sbjct: 512 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 571

                                                                       
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
            ||||| ||| | |  ||| || |||||| |||| |||| |||||||| ||||||   ||
Sbjct: 572 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 631

                                                                       
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
           ||||||||   |||| || ||||  ||||||||| |||||||||||||||||| ||  ||
Sbjct: 632 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 691

                                                                       
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
           ||||||| | |||   ||| || |  ||| |  || |||| |||||||||| |||||| |
Sbjct: 692 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 751

                                                                       
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
           |  ||| || ||||||| |||||||||  |||||||| ||||||| |  || ||||||||
Sbjct: 752 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 811

                                
Query: 618 taaattacctggaataacatt 638
           |||| ||||||||| ||||||
Sbjct: 812 taaaatacctggaacaacatt 832


 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
           |||||| ||| ||||||||||||||||||  |||||| |||||| | ||||||
Sbjct: 294 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 346


>ref|NM_080387.1| Homo sapiens C-type lectin-like receptor (CLEC-6), mRNA
          Length = 648

 Score =  153 bits (77), Expect = 3e-34
 Identities = 305/381 (80%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
           |||||||||||||||||| ||||| || |||||||||| ||||||| |||| |||  |||
Sbjct: 261 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 320

                                                                       
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
           ||| || |||||||| ||||||||| |    |||||| ||||||||| ||| ||||| ||
Sbjct: 321 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 380

                                                                       
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
            ||||| ||| | |  ||| || |||||| |||| |||| |||||||| ||||||   ||
Sbjct: 381 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 440

                                                                       
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
           ||||||||   |||| || ||||  ||||||||| |||||||||||||||||| ||  ||
Sbjct: 441 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 500

                                                                       
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
           ||||||| | |||   ||| || |  ||| |  || |||| |||||||||| |||||| |
Sbjct: 501 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 560

                                                                       
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
           |  ||| || ||||||| |||||||||  |||||||| ||||||| |  || ||||||||
Sbjct: 561 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 620

                                
Query: 618 taaattacctggaataacatt 638
           |||| ||||||||| ||||||
Sbjct: 621 taaaatacctggaacaacatt 641


 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
           |||||| ||| ||||||||||||||||||  |||||| |||||| | ||||||
Sbjct: 103 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 155


>gb|AF411850.1|AF411850 Homo sapiens C-type lectin-like receptor CLEC-6 mRNA, complete cds
          Length = 753

 Score =  153 bits (77), Expect = 3e-34
 Identities = 305/381 (80%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
           |||||||||||||||||| ||||| || |||||||||| ||||||| |||| |||  |||
Sbjct: 324 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 383

                                                                       
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
           ||| || |||||||| ||||||||| |    |||||| ||||||||| ||| ||||| ||
Sbjct: 384 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 443

                                                                       
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
            ||||| ||| | |  ||| || |||||| |||| |||| |||||||| ||||||   ||
Sbjct: 444 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 503

                                                                       
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
           ||||||||   |||| || ||||  ||||||||| |||||||||||||||||| ||  ||
Sbjct: 504 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 563

                                                                       
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
           ||||||| | |||   ||| || |  ||| |  || |||| |||||||||| |||||| |
Sbjct: 564 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 623

                                                                       
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
           |  ||| || ||||||| |||||||||  |||||||| ||||||| |  || ||||||||
Sbjct: 624 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 683

                                
Query: 618 taaattacctggaataacatt 638
           |||| ||||||||| ||||||
Sbjct: 684 taaaatacctggaacaacatt 704


 Score = 50.1 bits (25), Expect = 0.003
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
           |||||| ||| ||||||||||||||||||  |||||| |||||| | ||||||
Sbjct: 166 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 218


>gb|AC079632.4| Oryza sativa chromosome 10 clone OSJNBa0046L02, complete sequence
          Length = 142381

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   aatgactttatggaagaaga 539
             ||||||||||||||||||||
Sbjct: 12639 aatgactttatggaagaaga 12620


>gb|AC108883.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1136E01,
             from chromosome 10, complete sequence
          Length = 113856

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   aatgactttatggaagaaga 539
             ||||||||||||||||||||
Sbjct: 87114 aatgactttatggaagaaga 87133


>gb|AC073958.4|AC073958 Homo sapiens BAC clone RP11-533L22 from 7, complete sequence
          Length = 168991

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    tgctgatgagaatgtggaag 451
              ||||||||||||||||||||
Sbjct: 128769 tgctgatgagaatgtggaag 128750


>gb|AC010913.9|AC010913 Homo sapiens BAC clone RP11-44N22 from 2, complete sequence
          Length = 209161

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 564   tgaaaaatgggtctggaatgactttcct 591
             ||||| |||||| |||||||||||||||
Sbjct: 23488 tgaaacatgggtgtggaatgactttcct 23461


>gb|AC090952.2|AC090952 Homo sapiens chromosome 3 clone RP11-588H7 map 3p, complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   tggcatgagagcgagaggaa 329
             ||||||||||||||||||||
Sbjct: 43905 tggcatgagagcgagaggaa 43924


 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   tggcatgagagcgagaggaa 329
             ||||||||||||||||||||
Sbjct: 42393 tggcatgagagcgagaggaa 42374


>emb|AL662836.7| Mouse DNA sequence from clone RP23-313L19 on chromosome 11
          Length = 120749

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 589   ccttgtcactttgaggtgag 608
             ||||||||||||||||||||
Sbjct: 27158 ccttgtcactttgaggtgag 27139


>emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chromosome 13
          Length = 150986

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    gctgttgtttccatctcgtt 89
             ||||||||||||||||||||
Sbjct: 66153 gctgttgtttccatctcgtt 66134


>emb|AL354733.15|AL354733 Human DNA sequence from clone RP11-575L7 on chromosome 9, complete
             sequence [Homo sapiens]
          Length = 189579

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tttatttcaacttgtttggt 122
             ||||||||||||||||||||
Sbjct: 91846 tttatttcaacttgtttggt 91827


>emb|AL353743.22|AL353743 Human DNA sequence from clone RP11-213G2 on chromosome 9, complete
             sequence [Homo sapiens]
          Length = 181864

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tttatttcaacttgtttggt 122
             ||||||||||||||||||||
Sbjct: 72332 tttatttcaacttgtttggt 72351


>emb|AL162832.6|CNS01RI3 Human chromosome 14 DNA sequence BAC R-544I20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158424

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gagaggagccacagcctgga 222
             ||||||||||||||||||||
Sbjct: 78362 gagaggagccacagcctgga 78381


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 29, 2002 12:33 AM
  Number of letters in database: 867,074,787
  Number of sequences in database:  1,192,858
  
Lambda     K      H
    1.37    0.711 5.30e-313 

Gapped
Lambda     K      H
    1.37    0.711 5.30e-313 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,933,610
Number of Sequences: 1192858
Number of extensions: 1933610
Number of successful extensions: 37681
Number of sequences better than 10.0: 15
length of query: 660
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 639
effective length of database: 5,136,992,065
effective search space: 3282537929535
effective search space used: 3282537929535
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

Query= MMLHDC X57437|AnnotatedGene|gene|75|2063|1|+|.|id unnamed_gene0
 ; number 1  
         (701 letters)

Searching... please wait.. done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NM_008230.2| Mus musculus histidine decarboxylase cluster (H...  1390  0.0
emb|X57437.1|MMLHDC M.musculus mRNA for L-histidine decarboxylase    1390  0.0
gb|AF109137.1|AF109137 Mus musculus histidine decarboxylase (Hdc...  1358  0.0
gb|M29591.1|RATHIDCX Rat histidine decarboxylase (Hdc) mRNA, com...   918  0.0
gb|M38759.1|RATABP1 Rat androgen binding protein (ABP) mRNA, com...   904  0.0
ref|XM_083929.1| Homo sapiens histidine decarboxylase (HDC), mRNA     670  0.0
ref|XM_007561.3| Homo sapiens similar to histidine decarboxylase...   670  0.0
gb|M60445.1|HUMHDC Human histidine decarboxylase (HDC) mRNA, com...   670  0.0
ref|NM_002112.1| Homo sapiens histidine decarboxylase (HDC), mRNA     646  0.0
emb|X54297.1|HSHISDEC Human mRNA for histidine decarboxylase (EC...   646  0.0

>ref|NM_008230.2| Mus musculus histidine decarboxylase cluster (Hdc), mRNA
          Length = 2371

 Score = 1390 bits (701), Expect = 0.0
 Identities = 701/701 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 134

                                                                       
Query: 61  atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 194

                                                                       
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 254

                                                                       
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 314

                                                                       
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 374

                                                                       
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 434

                                                                       
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 494

                                                                       
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 554

                                                                       
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 614

                                                                       
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 674

                                                                       
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 734

                                                    
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gacgacaacttctcactccgaggagaagctctccagaaagc 775


>emb|X57437.1|MMLHDC M.musculus mRNA for L-histidine decarboxylase
          Length = 2371

 Score = 1390 bits (701), Expect = 0.0
 Identities = 701/701 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 134

                                                                       
Query: 61  atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 194

                                                                       
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 254

                                                                       
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 314

                                                                       
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 374

                                                                       
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 434

                                                                       
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 494

                                                                       
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 554

                                                                       
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 614

                                                                       
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 674

                                                                       
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 734

                                                    
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gacgacaacttctcactccgaggagaagctctccagaaagc 775


>gb|AF109137.1|AF109137 Mus musculus histidine decarboxylase (Hdc) mRNA, complete cds
          Length = 2224

 Score = 1358 bits (685), Expect = 0.0
 Identities = 697/701 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 79

                                                                       
Query: 61  atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 139

                                                                       
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 199

                                                                       
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 259

                                                                       
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 319

                                                                       
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 379

                                                                       
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 439

                                                                       
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 499

                                                                       
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 500 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgaaagcatgcgag 559

                                                                       
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 cccgatgctaatgagtcctccctgaacgctcggctcgttgcctacacctctgatcaggct 619

                                                                       
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 679

                                                    
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacgacaacttctcactccgaggagaagctctccagaaagc 720


>gb|M29591.1|RATHIDCX Rat histidine decarboxylase (Hdc) mRNA, complete cds
          Length = 2360

 Score =  918 bits (463), Expect = 0.0
 Identities = 610/659 (92%)
 Strand = Plus / Plus

                                                                       
Query: 40  taccgagctagagggaaagagatggtggattacatctcccagtacctgagcactgtgcgg 99
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 103 taccaagctagagggaaagagatggtggattacatctgccagtacctgagcaccgtgcgg 162

                                                                       
Query: 100 gagaggcaggtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagt 159
           |||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| | |||
Sbjct: 163 gagaggcaggtgaccccaaatgtgaagcctgggtacctgcgagcccagataccttcaagt 222

                                                                       
Query: 160 gctcccgaggaacccgacagctgggacagcatctttggggacattgaacgagtcatcatg 219
           ||||| |||||||||||||||||||| |||||||||||||||||||| | | ||||||||
Sbjct: 223 gctcctgaggaacccgacagctgggatagcatctttggggacattgagcaaatcatcatg 282

                                                                       
Query: 220 cctggggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctca 279
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 283 cctggggtggttcactggcagagcccccacatgcacgcctactatccggctctcacctct 342

                                                                       
Query: 280 tggccatccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgg 339
           |||||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||
Sbjct: 343 tggccatccctgctaggagatatgctggctgatgccatcaactgcttggggttcacgtgg 402

                                                                       
Query: 340 gcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagatg 399
           || || ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcttccagcccggcctgcacagagctggagatgaacatcatggactggctggcgaagatg 462

                                                                       
Query: 400 ctggggctcccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtctta 459
           |||||||||||||| | ||||||||||||||||||||||||||  |||||||| ||||| 
Sbjct: 463 ctggggctcccggacttcttcctgcaccaccatcccagcagccaggggggaggcgtcttg 522

                                                                       
Query: 460 cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 cagaggactgtcagcgaatccactttaattgccctgctggcagcaaggaagaacaaaatc 582

                                                                       
Query: 520 ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
           |||| ||||| ||||   |||||| ||||| | |||||||| |||||||||||||| |||
Sbjct: 583 ctagaaatgaaagcgcatgagcccaatgctgatgagtcctctctgaacgctcgtcttgtt 642

                                                                       
Query: 580 gcctacacctctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtg 639
           |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gcctatgcctctgaccaggctcactcttcagtggagaaggctggcttgatttcccttgtg 702

                                                                      
Query: 640 aagatcagatttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aagatcaaatttctgcctgtggacgacaacttctcactccgaggagaagctctccagaa 761


 Score = 46.1 bits (23), Expect = 0.047
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 1   atgatggagccctgtgaataccgtgaatacc 31
           |||||||||||| ||||||||| ||||||||
Sbjct: 76  atgatggagcccagtgaataccatgaatacc 106


>gb|M38759.1|RATABP1 Rat androgen binding protein (ABP) mRNA, complete cds
          Length = 2975

 Score =  904 bits (456), Expect = 0.0
 Identities = 600/648 (92%)
 Strand = Plus / Plus

                                                                        
Query: 51   agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 729  agggaaagagatggtggattacatctgccagtacctgagcaccgtgcgggagaggcaggt 788

                                                                        
Query: 111  gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
            ||| ||||||||| ||||||| ||||||||||||||| ||||| | |||||||| |||||
Sbjct: 789  gaccccaaatgtgaagcctgggtacctgcgagcccagataccttcaagtgctcctgagga 848

                                                                        
Query: 171  acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtggt 230
            ||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 849  acccgacagctgggatagcatctttggggacattgagcaaatcatcatgcctggggtggt 908

                                                                        
Query: 231  tcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatccct 290
            |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 909  tcactggcagagcccccacatgcacgcctactatccggctctcacctcttggccatccct 968

                                                                        
Query: 291  gctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagccc 350
            ||||||||| |||||||| |||||||| |||||||| || ||||||||||| || |||||
Sbjct: 969  gctaggagatatgctggctgatgccatcaactgcttggggttcacgtgggcttccagccc 1028

                                                                        
Query: 351  agcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctccc 410
             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ggcctgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctccc 1088

                                                                        
Query: 411  ggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgt 470
            ||| | ||||||||||||||||||||||||||  |||||||| ||||| ||||| |||||
Sbjct: 1089 ggacttcttcctgcaccaccatcccagcagccaggggggaggcgtcttgcagaggactgt 1148

                                                                        
Query: 471  cagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgac 530
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| 
Sbjct: 1149 cagcgaatccactttaattgccctgctggcagcaaggaagaacaaaatcctagaaatgaa 1208

                                                                        
Query: 531  agcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctc 590
            ||||   |||||| ||||| | |||||||| |||||||||||||| ||||||||  ||||
Sbjct: 1209 agcgcatgagcccaatgctgatgagtcctctctgaacgctcgtcttgttgcctatgcctc 1268

                                                                        
Query: 591  tgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatt 650
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1269 tgaccaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaaatt 1328

                                                            
Query: 651  tctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
            ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 tctgcctgtggacgacaacttctcactccgaggagaagctctccagaa 1376


>ref|XM_083929.1| Homo sapiens histidine decarboxylase (HDC), mRNA
          Length = 2398

 Score =  670 bits (338), Expect = 0.0
 Identities = 572/650 (88%)
 Strand = Plus / Plus

                                                                       
Query: 49  agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189

                                                                       
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
           ||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249

                                                                       
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309

                                                                       
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
           || || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369

                                                                       
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
           |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429

                                                                       
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
           || || || |||||||||||||||||| ||||||||||| |||| || |||||||| || 
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489

                                                                       
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
           || ||| ||||| |||||||||| ||||||||||  || ||||| ||| | |||||||| 
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 549

                                                                       
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609

                                                                       
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
           | | |||  |||||||||||| | ||||||| ||| || || || ||||| |||||  ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669

                                                                       
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
           ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729

                                                             
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779


>ref|XM_007561.3| Homo sapiens similar to histidine decarboxylase (H. sapiens)
           (LOC145642), mRNA
          Length = 2397

 Score =  670 bits (338), Expect = 0.0
 Identities = 572/650 (88%)
 Strand = Plus / Plus

                                                                       
Query: 49  agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189

                                                                       
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
           ||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249

                                                                       
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309

                                                                       
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
           || || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369

                                                                       
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
           |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429

                                                                       
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
           || || || |||||||||||||||||| ||||||||||| |||| || |||||||| || 
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489

                                                                       
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
           || ||| ||||| |||||||||| ||||||||||  || ||||| ||| | |||||||| 
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 549

                                                                       
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609

                                                                       
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
           | | |||  |||||||||||| | ||||||| ||| || || || ||||| |||||  ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669

                                                                       
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
           ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729

                                                             
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779


>gb|M60445.1|HUMHDC Human histidine decarboxylase (HDC) mRNA, complete cds
          Length = 2355

 Score =  670 bits (338), Expect = 0.0
 Identities = 572/650 (88%)
 Strand = Plus / Plus

                                                                       
Query: 49  agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  
Sbjct: 79  agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 138

                                                                       
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
           ||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 139 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 198

                                                                       
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 199 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 258

                                                                       
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
           || || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 259 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 318

                                                                       
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
           |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 319 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 378

                                                                       
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
           || || || |||||||||||||||||| ||||||||||| |||| || |||||||| || 
Sbjct: 379 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 438

                                                                       
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
           || ||| ||||| |||||||||| ||||||||||  || ||||| ||| | |||||||| 
Sbjct: 439 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 498

                                                                       
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 499 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 558

                                                                       
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
           | | |||  |||||||||||| | ||||||| ||| || || || ||||| |||||  ||
Sbjct: 559 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 618

                                                                       
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
           ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 619 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 678

                                                             
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 679 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 728


>ref|NM_002112.1| Homo sapiens histidine decarboxylase (HDC), mRNA
          Length = 2396

 Score =  646 bits (326), Expect = 0.0
 Identities = 569/650 (87%)
 Strand = Plus / Plus

                                                                       
Query: 49  agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189

                                                                       
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
           ||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249

                                                                       
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309

                                                                       
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
           || || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369

                                                                       
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
           |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429

                                                                       
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
           || || || |||||||||||||||||| ||||||||||| |||| || |||||||| || 
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489

                                                                       
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
           || ||| ||||| |||||||||| ||||||||||  || ||||| ||| | |||   || 
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagcagacg 549

                                                                       
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609

                                                                       
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
           | | |||  |||||||||||| | ||||||| ||| || || || ||||| |||||  ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669

                                                                       
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
           ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729

                                                             
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779


>emb|X54297.1|HSHISDEC Human mRNA for histidine decarboxylase (EC 4.1.1.22)
          Length = 2396

 Score =  646 bits (326), Expect = 0.0
 Identities = 569/650 (87%)
 Strand = Plus / Plus

                                                                       
Query: 49  agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189

                                                                       
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
           ||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249

                                                                       
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309

                                                                       
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
           || || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369

                                                                       
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
           |||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429

                                                                       
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
           || || || |||||||||||||||||| ||||||||||| |||| || |||||||| || 
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489

                                                                       
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
           || ||| ||||| |||||||||| ||||||||||  || ||||| ||| | |||   || 
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagcagacg 549

                                                                       
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
           ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609

                                                                       
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
           | | |||  |||||||||||| | ||||||| ||| || || || ||||| |||||  ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669

                                                                       
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
           ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729

                                                             
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
           ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779


>gb|AF345330.1|AF345330 Mesocricetus auratus histidine decarboxylase mRNA, partial cds
          Length = 471

 Score =  537 bits (271), Expect = e-150
 Identities = 400/443 (90%)
 Strand = Plus / Plus

                                                                       
Query: 255 cgcctactatcctgctcttacctcatggccatccctgctaggagacatgctggccgatgc 314
           |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1   cgcctactatcctgctcttacctcttggccatccctgctaggagatatgctggctgatgc 60

                                                                       
Query: 315 cattaactgcttaggattcacgtgggcatctagcccagcttgcacagagctggagatgaa 374
           ||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||| 
Sbjct: 61  cattaactgcttaggattcacatgggcttccagtccagcgtgcacagagctggagatgag 120

                                                                       
Query: 375 catcatggactggctggcgaagatgctggggctcccggagtacttcctgcaccaccatcc 434
           | ||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 121 cgtcatggactggctggtgaagatgctggggctccctgagtacttcttgcatcaccatcc 180

                                                                       
Query: 435 cagcagccgagggggaggtgtcttacagagcactgtcagcgaatccactttaattgccct 494
           | ||||||  |||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 181 cggcagccaggggggaggcgtcttgcagagcactgtcagcgaatccactttgattgccct 240

                                                                       
Query: 495 gctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgagcccgatgctaacga 554
           | |||| ||||| |||||||||||||||| ||||  |  |   |||||||||||| ||||
Sbjct: 241 gttggctgcaaggaagaacaaaatcctagaaatgcaacagattgagcccgatgctgacga 300

                                                                       
Query: 555 gtcctccctgaacgctcgtctcgttgcctacacctctgatcaggctcactcttcagtgga 614
           |||||| ||||| ||||||||| |||||||  ||||||| ||||||||||| ||||||||
Sbjct: 301 gtcctctctgaatgctcgtctcattgcctatgcctctgaccaggctcactcctcagtgga 360

                                                                       
Query: 615 gaaggctggcttgatttcccttgtgaagatcagatttctacctgtggacgacaacttctc 674
           ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 361 gaaggctggtttgatttcccttgtgaagatgagatttctgcctgtggacgacaacttctc 420

                                  
Query: 675 actccgaggagaagctctccaga 697
           |||||||||||||||||| ||||
Sbjct: 421 actccgaggagaagctcttcaga 443


>gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110H11 map 15q21.1, complete
             sequence
          Length = 117627

 Score =  242 bits (122), Expect = 4e-61
 Identities = 164/178 (92%)
 Strand = Plus / Minus

                                                                         
Query: 51    agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
             ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  ||
Sbjct: 16740 agggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgtgt 16681

                                                                         
Query: 111   gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
             ||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct: 16680 gacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgagga 16621

                                                                       
Query: 171   acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
              ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16620 ccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 16563


 Score =  127 bits (64), Expect = 2e-26
 Identities = 103/116 (88%)
 Strand = Plus / Minus

                                                                         
Query: 225   ggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggcc 284
             |||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 11849 ggtggtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggcc 11790

                                                                     
Query: 285   atccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtggg 340
              ||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct: 11789 ctccctgctaggagacatgctggctgatgccatcaactgcttgggattcacctggg 11734


 Score =  125 bits (63), Expect = 6e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                        
Query: 596  aggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctac 655
            |||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||| |
Sbjct: 7606 aggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaatttctgc 7547

                                                       
Query: 656  ctgtggacgacaacttctcactccgaggagaagctctccagaa 698
            ||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 7546 ctgtggatgacaacttctcactccgaggggaagctcttcagaa 7504


 Score =  109 bits (55), Expect = 4e-21
 Identities = 118/139 (84%)
 Strand = Plus / Minus

                                                                        
Query: 460  cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
            |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 7998 cagagcacggtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatc 7939

                                                                        
Query: 520  ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
            || | ||||| | |||  |||||||||||| | ||||||| ||| || || || ||||| 
Sbjct: 7938 ctggaaatgaaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtg 7879

                               
Query: 580  gcctacacctctgatcagg 598
            |||||  ||||||| ||||
Sbjct: 7878 gcctatgcctctgaccagg 7860


 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                         
Query: 339   ggcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagat 398
             |||||| ||||| || || |||||||||||||||||| ||||||||||| |||| || ||
Sbjct: 10879 ggcatccagccctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaat 10820

                                                         
Query: 399   gctggggctcccggagtacttcctgcaccaccatcccagcagcc 442
             |||||| || || ||| ||||| |||||||||| ||||||||||
Sbjct: 10819 gctgggacttccagagcacttcttgcaccaccaccccagcagcc 10776


>dbj|D16583.1|HUMLHDC Human gene for L-histidine decarboxylase, complete cds
          Length = 32351

 Score =  242 bits (122), Expect = 4e-61
 Identities = 164/178 (92%)
 Strand = Plus / Plus

                                                                        
Query: 51   agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
            ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |  ||
Sbjct: 9598 agggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgtgt 9657

                                                                        
Query: 111  gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
            ||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct: 9658 gacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgagga 9717

                                                                      
Query: 171  acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9718 ccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 9775


 Score =  127 bits (64), Expect = 2e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                         
Query: 225   ggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggcc 284
             |||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 14490 ggtggtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggcc 14549

                                                                     
Query: 285   atccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtggg 340
              ||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct: 14550 ctccctgctaggagacatgctggctgatgccatcaactgcttgggattcacctggg 14605


 Score =  125 bits (63), Expect = 6e-26
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                         
Query: 596   aggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctac 655
             |||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||| |
Sbjct: 18636 aggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaatttctgc 18695

                                                        
Query: 656   ctgtggacgacaacttctcactccgaggagaagctctccagaa 698
             ||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 18696 ctgtggatgacaacttctcactccgaggggaagctcttcagaa 18738


 Score =  109 bits (55), Expect = 4e-21
 Identities = 118/139 (84%)
 Strand = Plus / Plus

                                                                         
Query: 460   cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
             |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 18244 cagagcacggtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatc 18303

                                                                         
Query: 520   ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
             || | ||||| | |||  |||||||||||| | ||||||| ||| || || || ||||| 
Sbjct: 18304 ctggaaatgaaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtg 18363

                                
Query: 580   gcctacacctctgatcagg 598
             |||||  ||||||| ||||
Sbjct: 18364 gcctatgcctctgaccagg 18382


 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                         
Query: 339   ggcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagat 398
             |||||| ||||| || || |||||||||||||||||| ||||||||||| |||| || ||
Sbjct: 15460 ggcatccagccctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaat 15519

                                                         
Query: 399   gctggggctcccggagtacttcctgcaccaccatcccagcagcc 442
             |||||| || || ||| ||||| |||||||||| ||||||||||
Sbjct: 15520 gctgggacttccagagcacttcttgcaccaccaccccagcagcc 15563


>gb|S67000.1|S67000 L-histidine decarboxylase {promoter} [mice, mastocytoma P-815
           cells, Genomic, 480 nt]
          Length = 480

 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 1   atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 53
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 449


>dbj|AB039880.1|AB039880 Mus musculus gene for L-histidine decarboxylase, exon 1, partial cds
          Length = 2127

 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1    atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 53
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 1257


>ref|XM_080380.1| Histidine decarboxylase (Hdc), mRNA
          Length = 3270

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
           ||||||||||||||||||| ||| || || | |||   ||| ||||| || || ||||||
Sbjct: 448 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 507

                                                 
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
           ||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 508 ctggcggatgcgattaactgcctgggattcacctgggc 545


>ref|NM_078955.1| Drosophila melanogaster Histidine decarboxylase (Hdc), mRNA
          Length = 3312

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
           ||||||||||||||||||| ||| || || | |||   ||| ||||| || || ||||||
Sbjct: 448 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 507

                                                 
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
           ||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 508 ctggcggatgcgattaactgcctgggattcacctgggc 545


>gb|AC099029.1| Drosophila melanogaster, chromosome 2R, region 46D-47A, BAC clone
            BACR09J12, complete sequence
          Length = 189620

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 244  ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
            ||||||||||||||||||| ||| || || | |||   ||| ||||| || || ||||||
Sbjct: 6031 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 5972

                                                  
Query: 304  ctggccgatgccattaactgcttaggattcacgtgggc 341
            ||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 5971 ctggcggatgcgattaactgcctgggattcacctgggc 5934


>gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
             BACR48F07, complete sequence
          Length = 175681

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 244   ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
             ||||||||||||||||||| ||| || || | |||   ||| ||||| || || ||||||
Sbjct: 42512 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 42571

                                                   
Query: 304   ctggccgatgccattaactgcttaggattcacgtgggc 341
             ||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 42572 ctggcggatgcgattaactgcctgggattcacctgggc 42609


>gb|AE003830.2|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 13 of
              52, complete sequence
          Length = 261846

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                          
Query: 244    ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
              ||||||||||||||||||| ||| || || | |||   ||| ||||| || || ||||||
Sbjct: 132905 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 132964

                                                    
Query: 304    ctggccgatgccattaactgcttaggattcacgtgggc 341
              ||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 132965 ctggcggatgcgattaactgcctgggattcacctgggc 133002


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 29, 2002 12:33 AM
  Number of letters in database: 867,074,787
  Number of sequences in database:  1,192,858
  
Lambda     K      H
    1.37    0.711 5.30e-313 

Gapped
Lambda     K      H
    1.37    0.711 5.30e-313 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,642,767
Number of Sequences: 1192858
Number of extensions: 1642767
Number of successful extensions: 31090
Number of sequences better than 10.0: 55
length of query: 701
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 680
effective length of database: 5,136,992,065
effective search space: 3493154604200
effective search space used: 3493154604200
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

Query= MMCYTOKNA X70058|AnnotatedGene|gene|734|2040|1|+|.|id
unnamed_gene0  ; number 1  
         (701 letters)

Searching... please wait.. done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|X70058.1|MMCYTOKNA M.musculus cytokine gene                      1390  0.0
gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, c...  1382  0.0
emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chr...  1382  0.0
emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the...  1382  0.0
gb|AF154245.1|AF154245 Rattus norvegicus chemotactic protein-3 g...   222  4e-55
ref|NM_013654.1| Mus musculus small inducible cytokine A7 (Scya7...   151  1e-33
gb|AF128194.1|AF128194 Mus musculus strain SJL/J small inducible...   151  1e-33
gb|AF128193.1|AF128193 Mus musculus strain B10.S/J small inducib...   151  1e-33
gb|S71251.1|S71251 monocyte chemotactic protein-3 [mice, macroph...   151  1e-33
emb|Z12297.1|MMINTRCRN M.musculus mRNA for intercrine                 151  1e-33

>emb|X70058.1|MMCYTOKNA M.musculus cytokine gene
          Length = 2559

 Score = 1390 bits (701), Expect = 0.0
 Identities = 701/701 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 793

                                                                        
Query: 61   gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 853

                                                                        
Query: 121  tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 913

                                                                        
Query: 181  ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 973

                                                                        
Query: 241  attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 1033

                                                                        
Query: 301  cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 1093

                                                                        
Query: 361  agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 1153

                                                                        
Query: 421  acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 1213

                                                                        
Query: 481  actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 1273

                                                                        
Query: 541  gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 1333

                                                                        
Query: 601  ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 1393

                                                     
Query: 661  tgggcaattctttaagcatcaacaaaagacccacaacctac 701
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 tgggcaattctttaagcatcaacaaaagacccacaacctac 1434


>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence
          Length = 222121

 Score = 1382 bits (697), Expect = 0.0
 Identities = 700/701 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92393 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 92334

                                                                         
Query: 61    gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92333 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 92274

                                                                         
Query: 121   tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92273 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 92214

                                                                         
Query: 181   ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92213 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 92154

                                                                         
Query: 241   attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92153 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 92094

                                                                         
Query: 301   cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92093 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 92034

                                                                         
Query: 361   agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92033 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 91974

                                                                         
Query: 421   acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91973 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 91914

                                                                         
Query: 481   actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91913 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 91854

                                                                         
Query: 541   gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91853 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 91794

                                                                         
Query: 601   ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91793 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 91734

                                                      
Query: 661   tgggcaattctttaagcatcaacaaaagacccacaacctac 701
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 91733 tgggcaattctttaagcatcaacaaaagacccacaacctac 91693


 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    gcttctgtgcctgctgctcatagc 41
             |||||| |||||||||||||||||
Sbjct: 22923 gcttctttgcctgctgctcatagc 22900


>emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chromosome 11, complete
              sequence [Mus musculus]
          Length = 143148

 Score = 1382 bits (697), Expect = 0.0
 Identities = 700/701 (99%)
 Strand = Plus / Minus

                                                                          
Query: 1      atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142719 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 142660

                                                                          
Query: 61     gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142659 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 142600

                                                                          
Query: 121    tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142599 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 142540

                                                                          
Query: 181    ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142539 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 142480

                                                                          
Query: 241    attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
              |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142479 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 142420

                                                                          
Query: 301    cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142419 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 142360

                                                                          
Query: 361    agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142359 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 142300

                                                                          
Query: 421    acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142299 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 142240

                                                                          
Query: 481    actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142239 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 142180

                                                                          
Query: 541    gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142179 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 142120

                                                                          
Query: 601    ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142119 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 142060

                                                       
Query: 661    tgggcaattctttaagcatcaacaaaagacccacaacctac 701
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142059 tgggcaattctttaagcatcaacaaaagacccacaacctac 142019


 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    gcttctgtgcctgctgctcatagc 41
             |||||| |||||||||||||||||
Sbjct: 73250 gcttctttgcctgctgctcatagc 73227


>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 149H13 of library Caltech CITB-BAC from chromosome
             11 of Mus musculus (mouse)
          Length = 240425

 Score = 1382 bits (697), Expect = 0.0
 Identities = 700/701 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81957 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 82016

                                                                         
Query: 61    gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82017 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 82076

                                                                         
Query: 121   tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82077 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 82136

                                                                         
Query: 181   ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 82196

                                                                         
Query: 241   attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 82256

                                                                         
Query: 301   cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82257 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 82316

                                                                         
Query: 361   agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82317 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 82376

                                                                         
Query: 421   acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82377 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 82436

                                                                         
Query: 481   actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82437 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 82496

                                                                         
Query: 541   gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82497 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 82556

                                                                         
Query: 601   ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82557 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 82616

                                                      
Query: 661   tgggcaattctttaagcatcaacaaaagacccacaacctac 701
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 82617 tgggcaattctttaagcatcaacaaaagacccacaacctac 82657


 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     gcttctgtgcctgctgctcatagc 41
              |||||| |||||||||||||||||
Sbjct: 151407 gcttctttgcctgctgctcatagc 151430


>gb|AF154245.1|AF154245 Rattus norvegicus chemotactic protein-3 gene, complete cds
          Length = 2416

 Score =  222 bits (112), Expect = 4e-55
 Identities = 237/276 (85%), Gaps = 7/276 (2%)
 Strand = Plus / Plus

                                                                        
Query: 318  tcctaggtcatcaaataggagcctgggatg-----gttctcaggtaaaagagggagggag 372
            |||| |||||||||||||| ||||||||||     ||||||||||| |||||  |||| |
Sbjct: 981  tcctgggtcatcaaataggggcctgggatgaaggtgttctcaggtagaagagaaaggggg 1040

                                                                        
Query: 373  aa-gaggcccaatgtctggtgggtgctttatccagcccaatttccagagacagtggttat 431
            || |||| ||||  ||| ||||| | |||||||||| ||||||||| || |||||||| |
Sbjct: 1041 aaagaggtccaagatctagtgggag-tttatccagctcaatttccatagtcagtggttct 1099

                                                                        
Query: 432  gtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggagactcataacca 491
             ||||||| |||||||||||| |||| ||||||||||||| |||||| ||||||||||||
Sbjct: 1100 atagaggccgtgtcacaactagacaccatttcttttatccaaaaaggggactcataacca 1159

                                                                        
Query: 492  gtgtctccttattctaaagaactgtggcattataataatgctttctagtgacacccatta 551
            ||||||||||||||||| |||||| ||||||||| || || | || ||||||||||||  
Sbjct: 1160 gtgtctccttattctaaggaactggggcattatactagtgttctccagtgacacccatgg 1219

                                                
Query: 552  ttgtcatcagctctttttgactctattgactggcat 587
            ||||||||||||||| ||| ||||||||||||||||
Sbjct: 1220 ttgtcatcagctcttcttgcctctattgactggcat 1255


 Score =  161 bits (81), Expect = 1e-36
 Identities = 175/205 (85%), Gaps = 1/205 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaagtgtg 65
           |||||||||| ||||||||||  ||||||||| ||| |||||||||| | | || |||||
Sbjct: 658 gatctctgccgcgcttctgtgtgtgctgctcacagctgctgctttcaccgtgcacgtgtg 717

                                                                       
Query: 66  ggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtcccttctct 125
           |||||||||||||||||||  ||||||   || ||||||||| |||||||| ||||||||
Sbjct: 718 ggcccaaccaggtgagacttgccctgctgtctttttcccagaacatgctgtaccttctct 777

                                                                       
Query: 126 gggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgctggctt 185
           ||||| |||  | ||   ||||||||||||| ||||||||||||||||  || |||||||
Sbjct: 778 gggacgttttgtggacctttacagaacaaggcttacccatagtctcac-cttcctggctt 836

                                    
Query: 186 tgccaaagtaggacaattaaaagaa 210
           |||||||||| | ||||||||||||
Sbjct: 837 tgccaaagtaaggcaattaaaagaa 861


 Score = 50.1 bits (25), Expect = 0.003
 Identities = 59/69 (85%), Gaps = 6/69 (8%)
 Strand = Plus / Plus

                                                                        
Query: 599  cattcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactag 658
            ||||||||||||||||||||| ||| |||| ||||     ||| ||||||||||| ||||
Sbjct: 1253 cattcaagtgagaaagaattgagga-catattaaa-----gagtagagacattaatctag 1306

                     
Query: 659  ggtgggcaa 667
            |||||||||
Sbjct: 1307 ggtgggcaa 1315


 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 262 tcccttaggactcatttgtggaaacaagatagttcttgcc 301
           |||||||||  |||||| |||| |||||||||||| ||||
Sbjct: 913 tcccttaggtttcatttttggagacaagatagttcctgcc 952


>ref|NM_013654.1| Mus musculus small inducible cytokine A7 (Scya7), mRNA
          Length = 808

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 112

                           
Query: 61  gtgtgggcccaaccag 76
           ||||||||||||||||
Sbjct: 113 gtgtgggcccaaccag 128


>gb|AF128194.1|AF128194 Mus musculus strain SJL/J small inducible cytokine A7 (ScyA7) mRNA,
           complete cds
          Length = 358

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 97

                           
Query: 61  gtgtgggcccaaccag 76
           ||||||||||||||||
Sbjct: 98  gtgtgggcccaaccag 113


>gb|AF128193.1|AF128193 Mus musculus strain B10.S/J small inducible cytokine A7 (ScyA7)
           mRNA, complete cds
          Length = 358

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 97

                           
Query: 61  gtgtgggcccaaccag 76
           ||||||||||||||||
Sbjct: 98  gtgtgggcccaaccag 113


>gb|S71251.1|S71251 monocyte chemotactic protein-3 [mice, macrophage cell line WEHI-3,
           mRNA, 808 nt]
          Length = 808

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 112

                           
Query: 61  gtgtgggcccaaccag 76
           ||||||||||||||||
Sbjct: 113 gtgtgggcccaaccag 128


>emb|Z12297.1|MMINTRCRN M.musculus mRNA for intercrine
          Length = 746

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 80

                          
Query: 61 gtgtgggcccaaccag 76
          ||||||||||||||||
Sbjct: 81 gtgtgggcccaaccag 96


>gb|L04694.1|MUSCYTOKIN Mouse cytokine (fic) mRNA, complete cds
          Length = 593

 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35  atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 94

                           
Query: 61  gtgtgggcccaaccag 76
           ||||||||||||||||
Sbjct: 95  gtgtgggcccaaccag 110


>gb|M57440.1|RABMCP1 Rabbit monocyte chemoattractant protein-1 (MCP-1) mRNA, complete
          cds
          Length = 607

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          ||||||| ||||||||||||||||||||||||||
Sbjct: 23 tctctgcaacgcttctgtgcctgctgctcatagc 56


>ref|XM_038982.1| Homo sapiens small inducible cytokine A2 (monocyte chemotactic
          protein 1) (SCYA2), mRNA
          Length = 725

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94


>ref|NM_002982.1| Homo sapiens small inducible cytokine A2 (monocyte chemotactic
          protein 1) (SCYA2), mRNA
          Length = 739

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94


>gb|BC009716.1|BC009716 Homo sapiens, small inducible cytokine A2 (monocyte chemotactic
          protein 1, homologous to mouse Sig-je), clone MGC:9434
          IMAGE:3901489, mRNA, complete cds
          Length = 743

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 64 tctctgccgcccttctgtgcctgctgctcatagc 97


>gb|AC005549.1|AC005549 Homo sapiens chromosome 17, clone hRPK.215_E_13, complete sequence
          Length = 147416

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 8     tctctgccacgcttctgtgcctgctgctcatagc 41
             |||||||| | |||||||||||||||||||||||
Sbjct: 61410 tctctgccgcccttctgtgcctgctgctcatagc 61377


 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 19    cttctgtgcctgctgctcatagccgctgctttcagc 54
             |||||||| |||||||||| ||| ||||||||||||
Sbjct: 46458 cttctgtgtctgctgctcacagcagctgctttcagc 46423


 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 19    cttctgtgcctgctgctcatagccgctgctttcagc 54
             |||||||| |||||||||||||| ||||| ||||||
Sbjct: 30940 cttctgtggctgctgctcatagcagctgccttcagc 30905


>emb|Y18933.1|HSY18933 Homo sapiens MCP-1 gene and enhancer region
          Length = 11793

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 8    tctctgccacgcttctgtgcctgctgctcatagc 41
            |||||||| | |||||||||||||||||||||||
Sbjct: 7617 tctctgccgcccttctgtgcctgctgctcatagc 7650


>gb|S69738.1|S69738 MCP-1=monocyte chemotactic protein [human, aortic endothelial
          cells, mRNA, 661 nt]
          Length = 661

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 39 tctctgccgcccttctgtgcctgctgctcatagc 72


>gb|S71513.1|S71513 monocyte chemoattractant protein-1 [human, mRNA, 739 nt]
          Length = 739

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94


>emb|X14768.1|HSMCP1 H.sapiens mRNA for monocyte chemoattractant protein 1 (MCP-1)
          Length = 725

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  tctctgccacgcttctgtgcctgctgctcatagc 41
          |||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 29, 2002 12:33 AM
  Number of letters in database: 867,074,787
  Number of sequences in database:  1,192,858
  
Lambda     K      H
    1.37    0.711 5.30e-313 

Gapped
Lambda     K      H
    1.37    0.711 5.30e-313 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,390,429
Number of Sequences: 1192858
Number of extensions: 2390429
Number of successful extensions: 51390
Number of sequences better than 10.0: 75
length of query: 701
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 680
effective length of database: 5,136,992,065
effective search space: 3493154604200
effective search space used: 3493154604200
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

--------------070307020303060002070505--