[Bioperl-l] How do I get at subsequent hit "score" info with BPlite?

[David Trusty]

Hi,

How can I get BPlite to give me information about all the
"Score" entries for a given hit?  It seems to stop at the
first one.  For example, the following "hsp" entry gives me
info on the query of the range(3261-3625), but I can't get
any info on the range (3071-3252).

How can I get at that info?

Thanks in advance!!

David


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>gnl|dbSNP|rs1539081_allelePos=501 total len = 555 |taxid = 9606|snpClass = 
>1
          Length = 555

Score =  724 bits (365), Expect(2) = 0.0
Identities = 365/365 (100%)
Strand = Plus / Minus


Query: 3261 gtaaaataatattgttttgtgtttttaatgaatattaagaaaatccaattacagcgcagc 
3320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365  gtaaaataatattgttttgtgtttttaatgaatattaagaaaatccaattacagcgcagc 306


Query: 3321 ttaggtgtgagctccaaactgaatgggttttattaagtatttgatacagtctatgcccca 
3380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305  ttaggtgtgagctccaaactgaatgggttttattaagtatttgatacagtctatgcccca 246


Query: 3381 taaatatgtgttgcattgaattaaagtaaatatccatcataaaaggtgcccaatttcagt 
3440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245  taaatatgtgttgcattgaattaaagtaaatatccatcataaaaggtgcccaatttcagt 186


Query: 3441 tctggaggcttcatgactattttcatctttccttttgcagtttgagaaggaactcctttc 
3500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185  tctggaggcttcatgactattttcatctttccttttgcagtttgagaaggaactcctttc 126


Query: 3501 cgtaatcacgaaactatcattctgaatcacctcttaaaaacatcatctgcagtgacataa 
3560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125  cgtaatcacgaaactatcattctgaatcacctcttaaaaacatcatctgcagtgacataa 66


Query: 3561 taacattccttagaagtggctattgttgcaacaatctgtctccttaaaccttatcacagt 
3620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65   taacattccttagaagtggctattgttgcaacaatctgtctccttaaaccttatcacagt 6


Query: 3621 gcaag 3625
            |||||
Sbjct: 5    gcaag 1


Score =  357 bits (180), Expect(2) = 0.0
Identities = 181/182 (99%)
Strand = Plus / Minus


Query: 3071 taagtaattatttctaaatctcctagcagtgcctgacacatagtaagtattcaatgaatg 
3130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 555  taagtaattatttctaaatctcctagcagtgcctgacacatagtaagtattcaaygaatg 496


Query: 3131 ttaaccattgttacatttactattttttagaggcatttgtgtggcttaattcatagtgcc 
3190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  ttaaccattgttacatttactattttttagaggcatttgtgtggcttaattcatagtgcc 436


Query: 3191 cttcttcaacttcacaccactttgcttcaccccacaaactataagcaacaaatgcaaata 
3250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435  cttcttcaacttcacaccactttgcttcaccccacaaactataagcaacaaatgcaaata 376


Query: 3251 cc 3252
            ||
Sbjct: 375  cc 374

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



_________________________________________________________________
Send and receive Hotmail on your mobile device: http://mobile.msn.com