[Bioperl-l] Number of hits

[Ross Gibbs]

I am parsing a blast report with 365 hits in it but using the following I
get only 50.

Why?

  $blast = Bio::Tools::Blast->new(-file   =>"$file",
                                  -signif => 1e-07,
                                  -parse  => 1,
                                  -stats  => 1,
                                  -check_all_hits => 1,
                                                         );
 ...

  $num_hits =  $blast->num_hits;
  print "HITS: $num_hits\n";



Thanks