[Bioperl-l] parsing clone/contig coordinates from genbank

Ewan Birney birney@ebi.ac.uk
Fri, 2 Nov 2001 09:21:10 +0000 (GMT)


On Thu, 1 Nov 2001, Chris Mungall wrote:

> 
> I'm trying to parse this:
> ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/C_elegans/CHR_I/worm_I.gbs
> 
> But I get this:
> Can't call method "_generic_seqfeature" on an undefined value at
> /users/cjm/cvs/bioperl-live/Bio/SeqIO/genbank.pm line 277
> 
> is it pushing the genbank parser too far to get contig coordinates?

Which version? line 227 doesn't call _generic_seqfeature for me.



> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
> 

-----------------------------------------------------------------
Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
-----------------------------------------------------------------