[Bioperl-l] installing BioPerl from CPAN

[Malcolm Cook]

I've had success with

cpan> install "B/BI/BIRNEY/bioperl-0.7.0.tar.gz"

after first installing the bundle

Malcolm E. Cook
BioInfomatics
PPGx, Inc.

-----Original Message-----
From: bioperl-l-admin@bioperl.org [mailto:bioperl-l-admin@bioperl.org]On
Behalf Of Chris Dagdigian
Sent: Tuesday, March 06, 2001 4:00 PM
To: Jonathan Epstein
Cc: Bioperl General discussion
Subject: Re: [Bioperl-l] installing BioPerl from CPAN


Bundle::BioPerl will only install the dependencies. It will NOT
install the bioperl suite. This is pretty clear (I hope) on the website
and in the README docs for Bundle::BioPerl.

I don't believe that is is easy to get and/or install the
bioperl-0.7.0.tar.gz file via a CPAN.pm shell. I've spent a few minutes
fooling around with this and had no success.

I will correct this on the website.

Anyone else have any luck CPAN.pm and "readme bioperl" or "get bioperl"?



-Chris



On Tue, 6 Mar 2001, Jonathan Epstein wrote:

> OK, here's a dumb question.  I see that BioPerl 0.7 has made it onto CPAN:
>    http://search.cpan.org/search?dist=bioperl
>
> But how do you install it after having typed "perl -MCPAN -e shell"?
>
> I've tried "install Bio", "install BioPerl" and "install
> BioPerl::Bundle".  The last one is the only one which actually does
> something, although I'm getting lots of warnings and errors in my system
> which had several 0.7 pre-tests installed pretty successfully.  But I'm
not
> convinced that any of these CPAN commands is correct.
>
> If the answer is not obvious, I think that it should be added to the
"CPAN"
> section of:
>    http://www.bioperl.org/Core/Latest/
>
> TIA,
>
> -Jonathan
>
>
> Jonathan Epstein                                Jonathan_Epstein@nih.gov
> Head, Unit on Biologic Computation              (301)402-4563
> Office of the Scientific Director               Bldg 31, Room 2A47
> Nat. Inst. of Child Health & Human Development  31 Center Drive
> National Institutes of Health                   Bethesda, MD 20892
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
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>

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