[Bioperl-l] installing BioPerl from CPAN

Jonathan Epstein Jonathan_Epstein@nih.gov
Wed, 07 Mar 2001 10:25:03 -0500


This looks promising, but I am still picking up the old version.  Do I need 
to clean out some sort of local cache, or do I just need to be patient for 
a few more days?  The beginning of my output follows below.

- Jonathan



install Bio::Seq

cpan shell -- CPAN exploration and modules installation (v1.59)
ReadLine support suppressed

cpan> cpan> Going to read 
C:\users\epstein\.cpan\sources\authors\01mailrc.txt.gz
CPAN: Compress::Zlib loaded ok
Going to read C:\users\epstein\.cpan\sources\modules\02packages.details.txt.gz
Going to read C:\users\epstein\.cpan\sources\modules\03modlist.data.gz
Running install for module Bio::Seq
Running make for B/BI/BIRNEY/bioperl-0.6.2.tar.gz
Scanning cache C:\users\epstein\.cpan\build for sizes
CPAN: MD5 loaded ok
Checksum for 
C:\users\epstein\.cpan\sources\authors\id\B\BI\BIRNEY\bioperl-0.6.2.tar.gz ok

At 03:12 AM 3/7/2001 , Ewan Birney wrote:
>On Tue, 6 Mar 2001, Chris Dagdigian wrote:
>
> >
> >
> > Bundle::BioPerl will only install the dependencies. It will NOT
> > install the bioperl suite. This is pretty clear (I hope) on the website
> > and in the README docs for Bundle::BioPerl.
> >
> > I don't believe that is is easy to get and/or install the
> > bioperl-0.7.0.tar.gz file via a CPAN.pm shell. I've spent a few minutes
> > fooling around with this and had no success.
>
>
>install Bio::Seq
>
>
>works for me  ;)
>
>-----------------------------------------------------------------
>Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
><birney@ebi.ac.uk>.
>-----------------------------------------------------------------
>
>
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