[Bioperl-l] GFF method in Bio::SeqFeatureI

[Mark Wilkinson]

Mark Wilkinson wrote:

> Let me have a look at that - it used to "eat its own dog food" but I might
> have buggered something with the last change I made.  Sorry guys!

Mattew - I have just committed a small change to the _gff2_string subroutine
which fixes a problem with fusing multiple values together (strangely enough,
my documentation of the code was correct, but the code itself was not!)

I doubt, however, that this was the problem you were describing in your
message since it is a rare event...  Unfortunately, I was not able to see any
other errors in the reading/writing of GFF2.  Can you send me an explicit
example of what is going wrong when you use it so that I can see the bug for
myself?

cheers!

M


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Dr. Mark Wilkinson
Bioinformatics Group
National Research Council of Canada
Plant Biotechnology Institute
110 Gymnasium Place
Saskatoon, SK
Canada