[Bioperl-l] Bio::SeqIO::swiss.pm - gene names

[Hilmar Lapp]

Forwarded as a bug report.

	Hilmar

"Corradi, John" wrote:
> 
> I checked CVS and this has not been fixed.  SwissProt entries list gene name
> synonyms on the same line, delimited by " OR ".  The parser in swiss.pm is
> just getting the first symbol listed:
> 
> #Gene name
> elsif (/^GN\s+(\S+)/) {
>         $seq->annotation->gene_name($1);
> }
> 
> This works just fine for me:
> 
> elsif(/^GN\s+([^\.]+)/) {
>         $seq->annotation->gene_name($1);
> }
> 
> Of course, you then have to split the string to get all the names.  Maybe
> annotation->{'gene_name'} should be an array reference?
> 
> Cheers,
> John
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-- 
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Hilmar Lapp                            email: lapp@gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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