[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1001

[Jason Stajich]

Felipe - 

you need to install the module
HTTP::Request on your machine.

You should have seen a message to this effect when you ran the install
process for bioperl
% perl Makefile.PL

If you can use CPAN to install on OS X you can do
% perl -MCPAN -e shell
CPAN> install Bundle::BioPerl

-Jason
On Thu, 30 Aug 2001 bioperl-bugs@bioperl.org wrote:

> JitterBug notification
> 
> new message incoming/1001
> 
> Message summary for PR#1001
> 	From: Felipe Veloso <felipe@holmeslab.usach.cl>
> 	Subject: Possible bug in SwissProt module
> 	Date: Thu, 30 Aug 2001 16:43:12 -0400 (CLT)
> 	0 replies 	0 followups
> 
> ====> ORIGINAL MESSAGE FOLLOWS <====
> 
> >From felipe@holmeslab.usach.cl Thu Aug 30 16:51:08 2001
> Received: from holmeslab.usach.cl (holmeslab.usach.cl [158.170.51.89])
> 	by pw600a.bioperl.org (8.11.2/8.11.2) with ESMTP id f7UKp6B30570
> 	for <bioperl-bugs@bio.perl.org>; Thu, 30 Aug 2001 16:51:06 -0400
> Received: from localhost (felipe@localhost)
> 	by holmeslab.usach.cl (8.8.8/8.8.8) with ESMTP id QAA00872
> 	for <bioperl-bugs@bio.perl.org>; Thu, 30 Aug 2001 16:43:12 -0400
> Date: Thu, 30 Aug 2001 16:43:12 -0400 (CLT)
> From: Felipe Veloso <felipe@holmeslab.usach.cl>
> To: bioperl-bugs@bio.perl.org
> Subject: Possible bug in SwissProt module
> Message-ID: <Pine.LNX.4.05.10108301632530.869-100000@holmeslab.usach.cl>
> MIME-Version: 1.0
> Content-Type: TEXT/PLAIN; charset=US-ASCII
> 
> 
> 	Hello there,
> 
> When running this simple program:
> 
> 	#!/usr/bin/perl
> 	use Bio::DB::SwissProt;
> 	$sp = new Bio::DB::SwissProt; 
> 	$seq = $sp->get_Seq_by_acc('p48586'); 
> 	print "$seq\n";
> 
> It failed and the following messages appeared:
> 
> 	Can't locate HTTP/Request/Common.pm in @INC (@INC contains:
> 	/System/Library/Perl/darwin /System/Library/Perl /Library/Perl/darwin
> 	/Library/Perl /Library/Perl /Network/Library/Perl/darwin
> 	/Network/Library/Perl /Network/Library/Perl .) at
> 	/Library/Perl/Bio/DB/SwissProt.pm line 105.
> 	BEGIN failed--compilation aborted at /Library/Perl/Bio/DB/SwissProt.pm
> 	line 105.
> 	Compilation failed in require at /Users/fveloso/bin/sprot.pl line 2.
> 	BEGIN failed--compilation aborted at /Users/fveloso/bin/sprot.pl line 2.
> 	
> Obviously it failed (line 2 of my script) when requiring the
> SwissProt module. Is it a bug or did i do something wrong when i installed
> BIOPERL in my computer (Mac OS X)? I just followed "THE EASY WAY"
> procedure describes in the README file.
> 
> Thanks in advance for your help...
> 
> 			Best regards,
> 
> 					Felipe
> 
> 
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