[Bioperl-l] Bio::Tools::Blast::HTML questions

[J. H. Park]

> "Zhao, David [PRI]" wrote:
> 
> It seems that nobody has had the same problem, or you guys think this is just
> not significant enough to be answered?
> 

Hi,

I think people did not have the same problem.
Usually parsing file is not a clear
problem with clear answer(also boring to
debug).

Can you tell me what the calling statement was
and the file you have?

Cheers,

Jong



> -----Original Message-----
> From:   Zhao, David  [PRI] [SMTP:DZhao1@prius.jnj.com]
> Sent:   Thursday, September 14, 2000 2:15 PM
> To:     'Bio-Perl'
> Subject:        [Bioperl-l] Bio::Tools::Blast::HTML questions
> 
> Hi there,
> It seems HTML module doesn't recognize the genbank format below (with AU027194.1
> instead of  AU027194)
> 
> dbj|AU027194.1|AU027194 Rattus norvegicus, OTSUKA clone, OT17.21...    52  4e-06
> gb|G38038.1|G38038 D11Moh17 P1 (K. Mohlke) Mus musculus STS geno...    50  2e-05
> gb|AF167500.1|AF167500 Mus musculus chromosome 10 STS D10Jhu28, ...    48  6e-05
> dbj|AU048942.1|AU048942 Rattus norvegicus, OTSUKA clone, 789h12,...    46  2e-04
> dbj|AU028307.1|AU028307 Rattus norvegicus, OTSUKA clone, OT27.34...    46  2e-04
> gb|G36407.1|G36407 D2Arz6 C57BL/6 YAC library I from Research Ge...    40  0.015
> dbj|AU048712.1|AU048712 Rattus norvegicus, OTSUKA clone, 750b02,...    38  0.060
> dbj|AU048021.1|AU048021 Rattus norvegicus, OTSUKA clone, 521g08,...    38  0.060
> 
> Has anybody had the same problem before, or any suggestion?
> 
> Thanks,
> 
> David
> 
> 
>      David Zhao
> 
>         Drug Discovery IM&T
>         The R.W.Johnson PRI
>         3210 Merryfield Row
>         San Diego, CA  92121
>         Tel:    (858) 784-3184

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