[Bioperl-l] Bio::PrimarySeq changes

[David Block]

I was surprised on my end by that thing.  We wrote a mouseover function
that translated sequences on the fly when the mouse was over an exon, and
the text window was immediately covered with sequence!  I removed it on
Friday with no ill effect.

-Dave

On Mon, 16 Oct 2000, Jason Eric Stajich wrote:

> I'm happy with the changes to add the id function, but the 
> changes on line 194 seem to be left over debugging code?  I'll remove
> unless Kris has a reason for it.
> 
> 206 peptide ../bioperl/bioperl-live/Bio> cvs diff -r1.14 PrimarySeq.pm
> Index: PrimarySeq.pm
> ===================================================================
> RCS file: /home/repository/bioperl/bioperl-live/Bio/PrimarySeq.pm,v
> retrieving revision 1.14
> retrieving revision 1.15
> diff -r1.14 -r1.15
> 194a195,197
> > defined($seq) && print STDOUT "PR seq:$seq~~\n";
> > 
> > 
> 443a447,468
> > 
> > =head2 id
> > 
> >  Title   : id
> >  Usage   : $id = $seq->id()
> >  Function: This is mapped on display_id
> >  Example :
> >  Returns : 
> >  Args    :
> > 
> > 
> > =cut
> > 
> > sub  id {
> >    my ($self,$value) = @_;
> > 
> >    if( defined $value ) {
> >       return $self->display_id($value);
> >    }
> >    return $self->display_id();
> > }
> > 
> 
> 
> Jason Stajich
> jason@chg.mc.duke.edu
> http://galton.mc.duke.edu/~jason/
> (919)684-1806 (office) 
> (919)684-2275 (fax) 
> Center for Human Genetics - Duke University Medical Center
> http://wwwchg.mc.duke.edu/ 
> 
> 
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-- 
David Block
dblock@gene.pbi.nrc.ca
http://bioinfo.pbi.nrc.ca/dblock/wiki
Plant Biotechnology Institute
National Research Council of Canada
Saskatoon, Saskatchewan