Bioperl: module for sequence content analysis?

Ewan Birney birney@sanger.ac.uk
Fri, 14 Jan 2000 09:21:47 +0000 (GMT)


On Fri, 14 Jan 2000, Gatherer, D. (Derek) wrote:

> Dear Bioperlers
> 
> Is there a Bioperl module that has a method returning the codon frequency
> table, or amino acid frequency table, or some other kind of hashed content
> data for Bio::Seq objects?  I am most interested in overlapping triplet
> frequencies in large FASTA-formatted databases.

Not that I know of. If you write something, please contribute...


> 
> Thanks
> 
> Derek Gatherer
> Target Discovery
> Organon Laboratories Ltd
> Newhouse
> Scotland ML1 5SH
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