[Bioperl-l] back to the grind of 0.7

[Ewan Birney]

Ok. Over the weekend and on monday I will have time to work again on
bioperl. Here is my proposed to do list.


(1) Drudgery:

Bio::PrimarySeq / PrimarySeqI to be pulled up to QC criteria.


Bio::SimpleAlign up to QC criteria as well.



(2) More fun stuff.


Refactor Bio::Seq set to be more flexible for other formats.

I am going to proprose a class

         Bio::Seq::GenEMBL

which derives off Bio::Seq, and has extensions for GenEMBL stuff, being
the date, sv etc etc stuff. Does this sound ok?


I don't think we need separate GenBank/EMBL classes as the information in
the files are pretty concordant (of course, if someone wants to help me
with ASN.1 parsing into this, join the party!)




(3) See what I can get out of Keith's PSU code into bioperl.



Sounds good? Hilmar - how are we doing - there aren't many green lights on
the task list, but I think that's because we haven't updated the Wiki...






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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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