[Bioperl-l] Re: GenBank XML report format & DTD

[Geer, Lewis (NLM/NCBI)]

Yes, the sequence is bit encoded, but it shouldn't be.  I've asked the
developer if he could fix it and he's looking into it -- there is a
performance issue (but not with the decoding algorithm itself).

Lewis



> -----Original Message-----
> From: Hilmar Lapp [mailto:hlapp@gmx.net]
> Sent: Wednesday, December 13, 2000 3:46 AM
> To: Geer, Lewis (NLM/NCBI)
> Cc: Bioperl
> Subject: [Bioperl-l] Re: GenBank XML report format & DTD
> 
> 
> "Geer, Lewis (NCBI)" wrote:
> > 
> > It's not documented, unfortunately.  Please send mail to
> > info@ncbi.nlm.nih.gov if you would like to see 
> documentation.  The form of
> > the url is given below:
> > 
> http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5174476&db=N
> ucleotide&dopt
> > =xml&txt=on
> 
> Thanks for the hint. The actual nucleotide sequence is bit-encoded,
> right? (Easy to decode, sure.)
> 
> 	Hilmar
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                                email: hlapp@gmx.net
> GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
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