Bioperl: Bio::Tools::Blast->new on sequence file w/no hits,

[Tim Kunau (CBC)]

> 
> The Blast parser currently checks for this string, but not finding it
> does not always mean that the Blast object will have hits since not
> all versions of Blast use this string. This is an example of the type
> of problem that arises when parsing a flat file format not intended
> for data exchange. For now, we can cope.


Agreed.


>  >     $blastObj->matrix
> 
> (which of course requires a valid blast object, but we're working on
> that ;).


I really appreciate it. You've been very helpful.

Thanks,

Tim
-- 
Timothy M. Kunau  kunau@ahc.umn.edu  Computational Biology Ctrs.
Genomic Database Administrator, Computing and Bioinformatics, AHC
612-626-6937  http://www.cbc.umn.edu/~kunau  http://www.cbc.umn.edu
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