Bioperl: How to do a batch search for UniGene at NCBI

[Peter J. Tonellato]

We have created an on-line tool that allows batched EST sequence
analysis.  Your EST's will be submitted to dbEST and the results screened
through UNIGENE (HUMAN, RAT or Mouse - your choice) to determine which
cluster the matched sequences are aligned with.  Feedback is welcomed -
the URL is:

http://athena.ifrc.mcw.edu/~est/blast.html

Peter Tonellato, Ph.D.
Director, Informatics Research Center
Medical College of Wisconsin
tone@mcw.edu

zhangck wrote:

> Hello,
>
>       Can anyone tell me ( or give me perl/cgi codes) how to do a
> batch search for UniGene over updated UniGene db? I want to run a
> script on my machine to search several hundreds of ESTs to find which
> UniGene each belongs to, but using the web interface takes much time
> for me.
>
>       Thanks ahead for your help!
>
> Best regards,
>  zhangck                          mailto:zhangck@usa.net
>
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