[Bioperl-announce-l] Null Pointer - NCBI C++ Exception

rgoldade rgoldade at sfu.ca
Thu May 19 22:33:49 UTC 2011


I received the following error while trying to run bl2seq from
standaloneblastplus. Has anyone else encountered this problem?

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: /usr/bin/blastp call crashed: There was a problem running
/usr/bin/blastp : Error: NCBI C++ Exception:
   
"/am/ncbiapdata/release/blast/src/2.2.24/Linux32-Suse-icc/c++/ICC1010-ReleaseMT--Linux32-Suse-icc/../src/corelib/ncbiobj.cpp",
line 688: Critical: ncbi::CObject::ThrowNullPointerException() - Attempt to
access NULL pointer.


STACK: Error::throw
STACK: Bio::Root::Root::throw
/home/ryan/perl5/lib/perl5/Bio/Root/Root.pm:368
STACK: Bio::Tools::Run::WrapperBase::_run
/usr/local/share/perl/5.10.1/Bio/Tools/Run/WrapperBase/CommandExts.pm:1012
STACK: Bio::Tools::Run::StandAloneBlastPlus::AUTOLOAD
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm:1303
STACK: Bio::Tools::Run::StandAloneBlastPlus::run
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:270
STACK: Bio::Tools::Run::StandAloneBlastPlus::bl2seq
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:342
STACK: bl2seqtest.pl:31
-----------------------------------------------------------


Thank you,
Ryan

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