[Biojava-l] Atom neighbors

Jose Duarte jose.duarte at rcsb.org
Tue Dec 12 12:44:55 EST 2023


The tutorial contains a section on how to calculate contacts between atoms
of a structure:
https://github.com/biojava/biojava-tutorial/blob/master/structure/contact-map.md

Let us know if you have any troubles with that or other specific questions.

Jose


On Tue, 12 Dec 2023 at 07:03, Enrico Morelli <morelli at cerm.unifi.it> wrote:

> Dear,
>
> is there a way to get all the atoms that fall within 3.0A from a given
> atom (e.g. Zn) in the PDB.
>
>
> Thanks
> --
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