[Biojava-l] Accessing Genbank entries via biojava

[Spencer Bliven]

Markus,

Good to hear from you! Are you still developing scabio for your class?

There has been a lot of GenBank work recently, so make sure you're using
4.1.0. There are definitely reader and writer classes. They should take an
InputStream if you open an http stream. There's also a
GenbankProxySequenceReader which can fetch from NCBI.

You can also post questions like this to biojava-l at lists.open-bio.org.

Cheers,
Spencer

On Fri, Jul 10, 2015 at 5:22 PM, Markus Gumbel <m.gumbel at hs-mannheim.de>
wrote:

> Dear Spencer,
>
>
>
> I hope you remember me: We once met in Berlin and you contributed to the
> scabio repository. Now I have question: Is it possible with biojava4 (or 3)
> to access Genbank sequences directly over the web? I haven’t found any
> suitable classes in the javadocs and even Google isn’t very informative.
> Thanks for you answer!
>
>
>
> Best,
>
>
>
> Markus
>
>
>
>
>
> Dr. Markus Gumbel, Professor Medical Informatics / Foreign Student Advisor
> at the Department of Computer Science
>
> Mannheim University of Applied Sciences, Department of Computer
> Science/Institute f. Medical Informatics
>
> Paul-Wittsack-Straße 10, D-68163 Mannheim, Germany
>
> Phone: +49 621 292-6246, http://mi.informatik.hs-mannheim.de/gumbel/en
>
>
>
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