[Biojava-l] Biojava-l Digest, Vol 150, Issue 8

[Khalil EL MAZOUARI]

Hi Jose,

I was using slf4j + logback.xml. Apparently I had a conflict with logback.xml and log4j2.xml from biojava!

Replacing logback.xml by log4j2.xml fixed the problem.

Thanks for your reply.

Khalil



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On 30 Aug 2015, at 14:00, biojava-l-request at mailman.open-bio.org wrote:

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>   1. Re: logging level (Jose Manuel Duarte)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Sun, 30 Aug 2015 13:57:44 +0200
> From: Jose Manuel Duarte <jose.duarte at psi.ch>
> To: <biojava-l at mailman.open-bio.org>
> Subject: Re: [Biojava-l] logging level
> Message-ID: <55E2EFB8.3010402 at psi.ch>
> Content-Type: text/plain; charset="windows-1252"; Format="flowed"
> 
> Hi Khalil
> 
> How exactly are you developing/deploying your application? Do you use 
> maven? Have you included any log4j2 configuration file at all?
> 
> You can surely always add a log4j2.xml config file to your project, in 
> there you can modify any logging configuration either for biojava or any 
> other part of your code that uses log4j2.
> 
> [biojava uses slf4j (a meta-logging framework which can use many 
> underlying implementations) and then log4j2 as the default implementation ]
> 
> Jose
> 
> 
> On 28.08.2015 17:33, Khalil EL MAZOUARI wrote:
>> Hi,
>> 
>> when I add biojava-alignment-4.1.0 and biojava-phylo-4.1.0 to my app, 
>> my logging level changes and is set by default to WARN.
>> 
>> Any idea how ?override? the logging level from biojava-4?
>> 
>> Thanks
>> 
>> 
>> 
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