[Biojava-l] BioJava, oracle problem with jdk

[Radomir]

Hello, sorry for spam. I solved the last error but i got new one. I can
compile core package to version 1.5 jdk but when i try to compile phylo
package i got error like that:
[INFO] biojava ........................................... SUCCESS [0.748s]
[INFO] biojava3-core ..................................... SUCCESS [7.076s]
[INFO] biojava3-phylo .................................... FAILURE [0.321s]

Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile
(default-compile) on project biojava3-phylo: Compilation failure
[ERROR] Failure executing javac, but could not parse the error:
[ERROR] javac: invalid flag: -s
[ERROR] Usage: javac <options> <source files>

can anyone help me?? i don`t have idea what i`m making wrong.


Radomir wrote:
> 
> Hi, thanks for reply. I`m having more problems with "recompiling" from 1.6
> to 1.5. I have done everything like u told me. When i`m trying to clean
> install with maven compiler i got error with version. Can somebody tell me
> its possible to compile biojava 3 with 1.5 jdk? I don`t have idea how to
> do that and its very important for me ( my final project on my studies ).
> Here is a part of error from compiler:
> 
> [ERROR] Failed to execute goal
> org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile
> (default-compile) on project biojava3-structure: Compilation failure
> [ERROR]
> C:\Users\radamek\workspace\maven.1361187141685\biojava\biojava3-structure\src\main\java\org\biojava\bio\structure\Chain.java:[28,-1]
> cannot access org.biojava3.core.sequence.template.Sequence
> [ERROR] bad class file:
> C:\Users\radamek\.m2\repository\org\biojava\biojava3-core\3.0.6-SNAPSHOT\biojava3-core-3.0.6-SNAPSHOT.jar(org/biojava3/core/sequence/template/Sequence.class)
> [ERROR] class file has wrong version 50.0, should be 49.0
> 
> Radomir wrote:
>> 
>> Hello, i`m trying to apply my project with oracle and biojava. I`m trying
>> to make a database for pairwise alignment ( FATCAT or CE ). These
>> algorithms are in biojava3+ packages. When i`m loading jar`s to mine
>> database i got error ( oracle is running on 1.5 jdk and biojava 3 is
>> compiled on 1.6, there are no chances to upgrade jdk on oracle ).. I find
>> on biojava wiki that version 3.0 of biojava is running on 1.5+ but when i
>> loaded these version to my database there was the same error. Here is my
>> question - is there any chances to get biojava 3 compiled with jdk 1.5 ?
>> ? Sorry for my english
>> 
> 
> 

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