[Biojava-l] Biojava moving to Github

[Andreas Prlic]

Hi Mark,

running checkstyle and findbugs as part of the build is a good idea... I'll
look into that.

Andreas


On Wed, Apr 3, 2013 at 11:07 PM, Mark Fortner <phidias51 at gmail.com> wrote:

> I was wishing I could just kibitz on some of the code without having to
> actually fix it. :-)
>
> Just some odd things I noticed in FastaReader and FastaWriter where the
> code contains a main instead of relying on the test case to give you an
> example.  And comments that are partial or missing.
>
> Are the checkstyle and findbugs plugins configured to run as part of the
> build?
>
> Mark
> On Apr 3, 2013 10:58 PM, "Spencer Bliven" <sbliven at ucsd.edu> wrote:
>
>> Mark–
>>
>> If you commit to your own fork and then create a pull request, it
>> automatically gives you a place for code review.
>>
>> You could also open up an issue.
>> https://github.com/biojava/biojava/issues
>>
>> -Spencer
>>
>>
>> On Wed, Apr 3, 2013 at 5:22 PM, Mark Fortner <phidias51 at gmail.com> wrote:
>>
>>> Great job you guys.  I've already spotted some minor things.  If only I
>>> could figure out a way to do a code review without doing a commit. :-)
>>>
>>> Cheers,
>>>
>>> Mark
>>>
>>>
>>>
>>> On Wed, Apr 3, 2013 at 5:03 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
>>>
>>>> Thanks Spencer for all your efforts in getting this set up! I hope that
>>>> will make the code base even more accessible and should provide a path
>>>> of
>>>> submitting patches more easily from now on.
>>>>
>>>> Let the social coding begin!
>>>>
>>>> Andreas
>>>>
>>>>
>>>> On Wed, Apr 3, 2013 at 4:32 PM, Spencer Bliven <sbliven at ucsd.edu>
>>>> wrote:
>>>>
>>>> > The transition to Github is now finished, although we're still
>>>> working on
>>>> > getting the documentation up-to-date. If you're currently using a
>>>> checkout
>>>> > of trunk from SVN, that checkout will still work but will not receive
>>>> any
>>>> > future updates. Please follow the instructions at
>>>> > http://biojava.org/wiki/Get_source to get a copy of the latest
>>>> source from
>>>> > git.
>>>> >
>>>> > The documentation is rather confusing at the moment, with references
>>>> to the
>>>> > old SVN interspersed with recent git instructions. If you run into
>>>> such a
>>>> > situation on the wiki, please fix it or mark the article with the
>>>> > {{outdated}} template so we can get the documentation back up to par.
>>>> >
>>>> > Thanks!
>>>> > Spencer
>>>> >
>>>> >
>>>> > On Tue, Mar 26, 2013 at 10:35 AM, Spencer Bliven <sbliven at ucsd.edu>
>>>> wrote:
>>>> >
>>>> > > Dear community,
>>>> > >
>>>> > > On the developer list we have been discussing moving the biojava
>>>> code to
>>>> > > github for some time. This transition is currently scheduled to
>>>> occur
>>>> > this
>>>> > > weekend. For users who get Biojava via binary jars or maven, this
>>>> will
>>>> > have
>>>> > > no effect on your projects. Users who compile the latest version of
>>>> the
>>>> > > source themselves may have to get a fresh version from github after
>>>> > April 1:
>>>> > >
>>>> > > biojava 3: https://github.com/biojava/biojava
>>>> > > biojava 1: https://github.com/biojava/biojava-legacy
>>>> > >
>>>> > > I'll be working on improving documentation for the transition this
>>>> week.
>>>> > > For those interested in the migration process, see
>>>> > > http://biojava.org/wiki/SVN_to_GIT_Migration. Some information
>>>> about
>>>> > > using git with eclipse is at
>>>> > > http://biojava.org/wiki/BioJava3_eclipse#Anonymous_access_with_Git.
>>>> And
>>>> > > http://biojava.org/wiki/Get_source will soon be updated with the
>>>> new
>>>> > > instructions for getting the latest source code from git.
>>>> > >
>>>> > > Please let me know if anyone has suggestions or concerns.
>>>> > >
>>>> > > -Spencer
>>>> > >
>>>> > _______________________________________________
>>>> > Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
>>>> > http://lists.open-bio.org/mailman/listinfo/biojava-l
>>>> >
>>>> _______________________________________________
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>>>> http://lists.open-bio.org/mailman/listinfo/biojava-l
>>>>
>>>
>>>
>>