[Biojava-l] Are there EJB entities for BioSQL?

[Jan T Kim]

Hi Andreas and All,

On Fri, Aug 03, 2012 at 02:21:01PM -0700, Andreas Prlic wrote:
> Hi Jan,
> 
> There is no biosql ORM mapping for biojava 3 currently. If you need
> something like that you would need to use biojava 1 or patch biojava
> 3...

ok -- so is there any general suggestion / recommendation / best
practice for building applications that involve handling annotated
sequence data and a web UI?

Best regards, Jan


> Andreas
> 
> 
> 
> On Fri, Aug 3, 2012 at 5:47 AM, Jan T Kim <jttkim at googlemail.com> wrote:
> > Dear All,
> >
> > is there a set of EJB 3 entities that correspond to BioSQL available?
> > I've noticed that there are is a Hibernate mapping in biojavax [1, 2] --
> > is that the recommended ORM solution?
> >
> > Personally, I'd prefer a set of classes, with the suitable annotations
> > from the javax.persistence package applied (@Entity, @Id etc.) to match
> > the BioSQL tables.
> >
> > Apparently there have been initiatives in this direction (e.g. [3]), has
> > any of these made it into mainstream BioJava? If not, why not?
> >
> > Best regards, Jan
> >
> > [1] http://biojava.org/wiki/BioJava:BioJavaXDocs
> > [2] http://www.biosql.org/wiki/BioJava_BioSQL_ORM
> > [3] http://www.biojava.org/pipermail/biojava-l/2008-October/006387.html
> > --
> >  +- Jan T. Kim -------------------------------------------------------+
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> > http://lists.open-bio.org/mailman/listinfo/biojava-l

-- 
 +- Jan T. Kim -------------------------------------------------------+
 |             email: jttkim at gmail.com                                |
 |             WWW:   http://www.jtkim.dreamhosters.com/              |
 *-----=<  hierarchical systems are for files, not for humans  >=-----*