[Biojava-l] why can't biojava fold RNA?

[Andreas Prlic]

If all your code is in Java and you have binaries for some external
software you can easily wrap it from Java and trigger the execution.

Andreas

On Tue, Sep 20, 2011 at 2:09 AM, quan zou <guoer713108 at gmail.com> wrote:
> Thanks, however, there is no java code. it cannot be imported into my java
> project.
>
> 2011/9/20 Andreas Prlic <andreas at sdsc.edu>
>>
>> Hi Quan,
>>
>> the Vienna RNA package is available as open source.  Did you take a look
>> at it?
>>
>> Andreas
>>
>>
>> On Mon, Sep 19, 2011 at 9:18 PM, quan zou <guoer713108 at gmail.com> wrote:
>> > Dear all,
>> >
>> >        Is there any java program or jar which can fold a RNA sequence to
>> > a
>> > secondary structure? Such as RNAfold?
>> >
>> >       Why RNAfold/ Vienna Package have not been contained in Biojava?
>> >
>> >                 Quan
>> > _______________________________________________
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>> > http://lists.open-bio.org/mailman/listinfo/biojava-l
>> >
>
>