[Biojava-l] demos from 1.8

[Andreas Prlic]

I think that most of those demos are heavily dependent on 1.8 code and
would need some major refactoring to work for 3.x. The best reference
to get started is the Cookbook ... (and we probably need more examples
there for 3.X )

Andreas

On Thu, Oct 20, 2011 at 2:33 PM, John Kern <kern3020 at gmail.com> wrote:
> Hello Andreas,
>
> I checked out the 3.x branch from subversion. I see two demo directories.
>
> jkern at ubuntu:~/src/java/biojava-trunk/biojava/biojava3-core/src/main/java/org/biojava3/core/sequence$
> find ~/src/java/biojava-trunk/ -name demo
> /home/jkern/src/java/biojava-trunk/biojava/biojava3-structure-gui/src/main/java/demo
> /home/jkern/src/java/biojava-trunk/biojava/biojava3-structure/src/main/java/demo
>
> I found no corresponding directories in the 1.8.1 tar ball.
>
> One of the articles
> (http://biojava.org/wiki/BioJava:Tutorial:Dynamic_programming_examples)
> refers to a source file called Dice.java. Would it make sense to
> migrate it to the new source? If so, do you know where I can find it?
>
> -jk
>
>
> On Thu, Oct 20, 2011 at 2:19 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
>> Hi John,
>>
>> several of the 3.X modules have a demo directory that give examples
>> how to work with them. I believe in the old code base there was also a
>> demo directory somewhere, not sure if it gets bundled in the aggregate
>> tar ball though.
>>
>> Andreas
>>
>>
>> On Thu, Oct 20, 2011 at 1:12 PM, John Kern <kern3020 at gmail.com> wrote:
>>> Hello,
>>>
>>> The 1.8 tutorial refers to a demos directory.
>>> "Additionally, a number of small demo programs can be found in the
>>> demos directory of the BioJava source distribution."
>>>
>>> Would it make sense to migrate them to the 3.x APIs?
>>>
>>> I downloaded the aggregate tar ball for 1.8.1.  I do not see it there.
>>> Where can I find it?
>>>
>>> Thanks,
>>> -john
>>> _______________________________________________
>>> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-l
>>>
>>
>