[Biojava-l] Calculating edit distance between 2 DNA Sequences

[Hannes Brandstätter-Müller]

Following up:

If there is no such thing, should I make it available if I write it?

Hannes

On Thu, Nov 3, 2011 at 14:08, Hannes Brandstätter-Müller
<biojava at hannes.oib.com> wrote:
> Hi!
>
> Is there a Class/Method in Biojava that calculates the Levenshtein
> distance between two sequences? I could not find anything in the docs
> at first search.
>
> I need to compare 2 DNASequences (or Strings) and get the number of
> insertions, deletions, and substitutions. Ideally, there would be an
> option to abort the comparison if the number of mismatches exceeds a
> certain number.
>
> Hannes
>