[Biojava-l] [Biojava-dev] Genbank import

[Andreas Prlic]

Hi Ed,

Interesting that you found this, this ancient tutorial has not been
modified since the early 2000s and has been replaced with the Cookbook
pages:

http://biojava.org/wiki/BioJava:CookBook

Some of the code for this is available as part of the BioJava-legacy
(v 1.8) project.

BioJava3 currently does not have a Genbank parser yet, only fasta. I
added it to the (new) missing features page :

http://www.biojava.org/wiki/BioJava3_Feature_Requests

Andreas



On Sun, Oct 30, 2011 at 7:54 PM, Ed Beaty <edbeaty at charter.net> wrote:
> Hello all.  Is it possible to import Genbank (*.gb) format files using BioJava 3?  I can't find the SeqIOTools class described in the GeneralReader example in the http://www.biojava.org/docs/bj_in_anger/ReadingGES.htm doc.
> Thanks,
> Ed Beaty
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