[Biojava-l] Final Application (Paiu Alexandru ) (added project plan)

[Peter Troshin]

Hi Alex,

You should not send your proposal directly to me or OBF.
Here is what Google said about it:
http://www.google-melange.com/document/show/gsoc_program/google/gsoc2011/faqs#directly
Here is the GSoC program
http://www.google-melange.com/gsoc/program/home/google/gsoc2011

Please do not forget to send your proposal to Google!

Regards,
Peter

On 28/03/2011 17:17, Alexandru Paiu wrote:
> *1.      **1.Your complete contact information*, including full name,
> physical address, preferred email address, and telephone number, plus other
> pertinent contact information such as IRC handles, etc.
>
>
>
> Full Name : Paiu Alexandru
>
> Address : Country Romania , city Constanta , Bld. Aurel Vlaicu , Nr. 41 ,
> Bl. Pc1 sc. B , Et 6 , Apt. 46
>
> E-mail : paiualex12 at google.com or paiualex12 at yahoo.com
>
> Telephone number : 40733924684
>
>
>
> *2.       **2.Why you are interested in the p*roject you are proposing and
> are well-suited to undertake it.
>
>
>
> This project suits me perfectly , because the interested students should
> have a general knowledge of core Java programming, knowledge of
> multi-threaded programming . I’ve started learning Java for 1 and a half
> years , and I used a lot of Threads in applications and projects .
>
> This is the only project that I apply , because I haven’t found a more
> interesting project than this one .
>
>
>
> *3.       **3.A summary of your programming *experience and skills.
>
>
>
> I’ve did a lot of miniproject and applications for school and for me . I’ve
> made projects like :
>
> a)      Lanchat Client-Server using TCP/IP – I wrote two applications : one
> for the client and one for the server . I used an JApplet for the client
> with Swing elements . I’ve used Threads especially in the server sider
> application , and sockets
>
> b)      Lanchat Peer-to-Peer using UDP and multicasting . I wrote only a
> application for  the client . I used Threads and multicast sockets .
>
> c)       A project for administrating a database , using a JApplet with
> Connector/J and MySql . It has to applications , one for clients and for the
> administrator .
>
>
> *4.        **4.Programs or projects you have previously* authored or
> contributed to  available as open-source, including, if applicable, any past
> Summer of Code involvement.
>
>
>
> I haven’t worked yet for any open-source and a I haven’t any past experience
> with GSoc , and it’s the first time a apply for a open-source project . I
> haven’t either worked for a company .
>
>
>
> *5.       **5. A project plan for the project* you are proposing, even if
> your proposed project is directly based on one of the proposed project ideas
> for member projects.
>
>
>
> I wish to apply to the project called *Amino Acids physic-chemical
> properties calculation .*
>
> I’ve been thinking since some time of a possible implementation and I
> stopped at a single one (that I think it’s the best) .
>
>
>
> I will use two main classes . One that will represent an atom of a substance
> ( for example He , H , O , etc ) , that will have params like : atom weight
> , name , abbreviation , valence .  I’ll use the second class for
> constructing amino-acids from this class . So , the second class will extend
> the class of atoms . So for example I have to initiate a molecule of H20
> (water) . I will have a constructor with a string param , that will build
> the substance . For example , let’s say that the second class it’s called
> Aminoacids , and the first one Atoms .
>
> Let’s say I choose from a Combo box H2O ( it’s only a example) . Then I sad
> the string “ H2O1” to the aminoacids class , to intiate an object of
> aminoacid . That constructor will be evaluated char by char . If it’s found
> a char or two chars that means that I have to initiate an atom of that char
> or chars . If it’s found a number , then that means that it’s the multiplier
> of that atom before it .
>
> So the class aminoacids will have a private Object [] array , in which will
> be number and objects called atoms .
>
> So for H20 the array will look like this : array[0] = atom of H (Hidrogen) ,
> array[1]=2 , array[2]=O (Oxigen) , array[3]=1 .
>
> All the know substances will be in a file called atoms.txt with atom mass ,
> name , abbreviation etc . The atoms class will have a method to add new
> atoms to the list .
>
>
>
> And for calculating the molecular weigth the algorithm is very simple . We
> already have array={H,2,O,1} , and the atoms will have as params the atoms
> weight so all we have to do is just :
>
> Mol. Weight=H.weight*2+O.weigth.*1
>
>
>
> The plan for implementing :
>
>
>
> -          May 20-June 20 – implementing the two classes and the first two
> methods
>
> -          June 20 – 20 July – Implementing the rest of the methods
>
> -          20 July – until the final – final retouching , docummentation for
> end users , and 1  method proposed by me
>
> -
>
> *6.       **6.Any obligations, vacations, or plans* for the summer that may
> require scheduling during the GSoC work period.
>
>
>
> I will have School final exams during 20 May – 20 June . So I won’t be able
> to work at maximum capacity . That’s all . I
>
>
> *7. PS *
>
> I hope you've got my short coding exercise program ( I received a kinda
> error for sending a mail will atachement)
>
> thanks
>
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