[Biojava-l] RichSequence.IOTools performance

Khalil El Mazouari khalil.elmazouari at gmail.com
Mon Mar 28 16:07:15 UTC 2011


Hi,

I am developing a sequence annotation app. It should handle ± 100.000 sequence per run.

When profiling the app (with 10.000 seq), the total execution time was ± 20 seconds, of which 57% was used for   RichSequence.IOTools.writeGenbak!!

How one could improve the RichSequence.IOTools performance? 

Thanks.

khalil



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