[Biojava-l] make feature to create embl or genbank file

[Hedwig Kurka]

I already built the set<RichFeature> and populated it.
Now I want to give it the RichSequence. But when I do that in that line:

rs.setRichFeatureSet(rfeatSet);

It says, that it needs a Set<Feature>

Regards,
Hedwig

> I'm not sure what you're trying to do - if you want to build a Set, you can just use the standard Java Collections API to create and populate a Set?
>
> cheers,
> Richard
>
> On 30 Jun 2011, at 09:12, Hedwig Kurka wrote:
>
>   
>> Hi Richard,
>>
>> Thank you for your answer.
>> If I create RichFeature objects, then I have to do conversions in that line:
>> RichFeature f = (RichFeature) seq.createFeature(t);
>> and then I have in that line:
>> rs.setRichFeatureSet(rfeatSet);
>> the problem, that I have a Set<RichFeature> and not Set<Feature>, but I
>> didn't find a method builds a Set containing RichFeature objects on a
>> RichSequence. Is there one?
>>
>>
>>     
>>> The conversion from Feature to RichFeature does its best but is not
>>> ideal. As you already have a RichSequence object to work with then you
>>> would be better creating native RichFeature objects instead of doing
>>> conversions.
>>>
>>> Richard Holland
>>> Eagle Genomics Ltd
>>> Sent from my HTC
>>>
>>>
>>>
>>>       
>>     
> --
> Richard Holland, BSc MBCS
> Operations and Delivery Director, Eagle Genomics Ltd
> T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
> http://www.eaglegenomics.com/
>
>
>
>