[Biojava-l] add Source Organism to genbank

Khalil El Mazouari khalil.elmazouari at gmail.com
Sun Jun 12 20:01:59 UTC 2011


Hi,

I am trying to set Organism to RichSequence via:

richSequence.setTaxon(new SimpleNCBITaxon(taxid)); //ncbi tax id

the genbank ouptut:

SOURCE      
  ORGANISM  
            .
FEATURES             Location/Qualifiers
     source          1..394
                     /mol_type="genomic DNA"
                     /strand="+"
                     /organism=""
                     /db_xref="taxon:10090"

How to add Organism display name to the Source Field and to the annotation organism?

Thanks

khalil



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