[Biojava-l] Local DB BLAST Comparison/Search

[Andreas Prlic]

Hi Mark,

regarding Blast, our recommendation is generally to get the XML output
and then just parse the data that you are interested in.

Andreas

On Thu, Jul 7, 2011 at 1:56 PM, Mark Stewart <mstewart at vbi.vt.edu> wrote:
> I'm a relatively new programmer, so I'm probably missing a number of obvious
> things, but if someone wouldn't mind pointing me in the right direction,
> that'd be great, because I'm having trouble figuring stuff out from the API.
>
> Just generally, which of the alignment/BLAST-related classes do I want to be
> looking over and using if I want to write some JAVA for doing similar
> sequence searches of a local database using the BLAST algorithm?
>
> -M
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