[Biojava-l] Write seq in Genbank format

[Richard Holland]

I don't think BJ3 has a Genbank parser yet (unless I missed something?), so under the older version of BJ you can do it like this:

   RichSequence rs = ....; // this is your annotated sequence object 
   RichSequence.IOTools.writeGenbank(System.out, rs, null);   // this writes it to STDOUT in Genbank format

cheers,
Richard

On 21 Jan 2011, at 18:48, Khalil El Mazouari wrote:

> Hi All,
> 
> how to output annotated sequences in Genbank format?
> 
> Thanks,
> 
> khalil
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--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/