[Biojava-l] structure alignment seems slow ...

[Jay Vyas]

Fixed my problem, the issue was that i had multiple models in my structures,
and I assumed biojava was only using the first one.

To fix it , if you replace


        Atom[] ca2 = StructureTools.getAtomCAArray(s2);

     with

        Atom[] ca2 = StructureTools.getAtomCAArray(s2.getModel(0).get(0));

The CE alignmenbt is blazing fast. ~0 seconds

-- 
Jay Vyas
MMSB/UCHC