[Biojava-l] biojava3 and symbol

[Andreas Prlic]

Hi Francois,

SymbolLists are part of BioJava 1.8 (the legacy version) and not 3.0.
You might want to get the previous version installed. It is available
from Maven as well...

Andreas

2011/2/25 François Le Fevre <flf.mib at gmail.com>:
> Hello
> I am a newbie in biojava3.
> I have installed the maven version.
>
> I have a question : is there a way to go from DNASequence to SymbolList?
> I would like to study codons and their frequency in several organisms.
> It was easy with biojava with
>
> "SymbolList codons  = SymbolListViews.windowedSymbolList(seq, 3);"
> and
> "DistributionTrainerContext"
>
> But now I am a little lost between maven biojava3 and biojava.
> So if anyone could explain me how to get codons view from DNASequence, it
> could be great.
>
> Thanks a lot!
>
> Francois
>
>
> --
> ----------------------
> Francois LE FEVRE
>
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