[Biojava-l] Fwd: Biojava3-genetics

[jitesh dundas]

Dear Sir,

I would like to work on this module.

How can I help?

Regards,
Jitesh Dundas

On 4/19/10, Andreas Prlic <andreas at sdsc.edu> wrote:
> Hi Richard,
>
> I am forwarding your message to the mailing list, since that is the best
> place to meet other people interested in genetics application.
>
> The BioJava source code is available via anonymous svn or the download page
> on the wiki.
>
> Andreas
>
> ---------- Forwarded message ----------
> From: Finkers, Richard <richard.finkers at wur.nl>
> Date: Sat, Apr 17, 2010 at 12:46 AM
> Subject: RE: Biojava3-genetics
> To: Andreas Prlic <andreas at sdsc.edu>
>
>
> Hi Andreas,
>
> To start with, associations with e.g. sequence variation (454) and phenotype
> data within larger sets of genetically different individuals. This will be
> code which I will have to write the coming year for one of my projects. I am
> planning to use this in combination the sequence and phylogeny based biojava
> modules.
>
> I also might consider migrating some of my current code to this module. This
> includes graphical representations of genetic data but also some statistical
> analysis for which we use the package R for the calculations but the rest of
> the data handling / formatting is done in Java.
>
> Some of the functionality, that I am thinking about, is available from other
> packages but I did not find the (java) source code.
>
> Richard
>
>
>
>
> -----Original Message-----
> From: andreas.prlic at gmail.com on behalf of Andreas Prlic
> Sent: Fri 2010-04-16 19:39
> To: Finkers, Richard
> Cc: biojava-dev at lists.open-bio.org
> Subject: Re: Biojava3-genetics
>
> Hi Richard,
>
> any contribution is welcome. What do you have in mind in particular? Perhaps
> there is already something there along those lines...
>
> Andreas
>
> On Thu, Apr 15, 2010 at 11:43 PM, Richard Finkers <Richard.Finkers at wur.nl
>>wrote:
>
>> Dear List,
>>
>> I would be interested in adding a module for genetic analysis to the
>> biojava3 project. Are there others who are interested in this as well and
>> with who should I discuss this further?
>>
>> Thanks,
>> Richard
>>
>>
>> --
>> Dr. Richard Finkers
>> Researcher Plant Breeding
>> Wageningen UR Plant Breeding
>> P.O. Box 16, 6700 AA, Wageningen, The Netherlands
>> Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB
>> Wageningen, The Netherlands
>> Tel. +31-317-484165 Fax +31-317-418094
>> http://www.plantbreeding.wur.nl/ <http://www.plantbreeding.wur.nl>
>> https://www.eu-sol.wur.nl/ <https://www.eu-sol.wur.nl>
>> https://cbsgdbase.wur.nl/ <https://cbsgdbase.wur.nl>
>> http://solgenomics.wur.nl/ <http://solgenomics.wur.nl>
>> http://www.disclaimer-uk.wur.nl/
>>
>>
>
>
> --
> -----------------------------------------------------------------------
> Dr. Andreas Prlic
> Senior Scientist, RCSB PDB Protein Data Bank
> University of California, San Diego
> (+1) 858.246.0526
> -----------------------------------------------------------------------
>
>
>
>
>
> --
> -----------------------------------------------------------------------
> Dr. Andreas Prlic
> Senior Scientist, RCSB PDB Protein Data Bank
> University of California, San Diego
> (+1) 858.246.0526
> -----------------------------------------------------------------------
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