[Biojava-l] [Fwd: Re: GSoC project on MSA]

[Cai Shaojiang]

Dear Sir:

I have submitted the proposal through Google.

Cheers.

On Thu, Apr 8, 2010 at 5:45 AM, Andreas Dräger <
andreas.draeger at uni-tuebingen.de> wrote:

> Hi Cai,
>
> Oh yes, it is in the alignment package. But it is only an interface. It
> already has two sub-types: AbstractULAlignment and this has the
> implementation SubULAlignment. We should check first if we can already use
> these data structures to easily produce a paired alignment. Can you see how
> the AlignmentPair is produced by the alignment algorithms in the alignment
> package? We should do something similar but with this different data
> structure, I suggest.
>
>
> Cheers
> Andreas
>
> --
> Dipl.-Bioinform. Andreas Dräger
> Eberhard Karls University Tübingen
> Center for Bioinformatics (ZBIT)
> Sand 1
> 72076 Tübingen
> Germany
>
> Phone: +49-7071-29-70436
> Fax:   +49-7071-29-5091
>



-- 
Cai Shaojiang
Department of Information Systems,
School of Computing,
National University of Singapore
Telephone: +65 93-4870-93
Email: caishaojiang at gmail.com; shaoj at comp.nus.edu.sg